The repton model of gel electrophoresis

被引:14
作者
Barkema, GT
Newman, MEJ
机构
[1] Institute for Advanced Study, Princeton, NJ 08540, Olden Lane
[2] Santa Fe Institute, Santa Fe, NM 87501
[3] HLRZ, Forschungszentrum Jülich
关键词
D O I
10.1016/S0378-4371(97)00220-3
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We discuss the repton model of agarose gel electrophoresis of DNA. We review previous results, both analytic and numerical, as well as presenting a new numerical algorithm for the efficient simulation of the model, and suggesting a new approach to the model's analytic solution.
引用
收藏
页码:25 / 39
页数:15
相关论文
共 17 条
[1]   ELECTROPHORESIS OF CHARGED POLYMERS - SIMULATION AND SCALING IN A LATTICE MODEL OF REPTATION [J].
BARKEMA, GT ;
MARKO, JF ;
WIDOM, B .
PHYSICAL REVIEW E, 1994, 49 (06) :5303-5309
[2]  
Barkema GT, 1996, BIOPOLYMERS, V38, P665, DOI 10.1002/(SICI)1097-0282(199605)38:5<665::AID-BIP10>3.0.CO
[3]  
2-7
[4]   REPTATION OF A POLYMER CHAIN IN PRESENCE OF FIXED OBSTACLES [J].
DEGENNES, PG .
JOURNAL OF CHEMICAL PHYSICS, 1971, 55 (02) :572-+
[5]   EXACT SOLUTION OF A 1D ASYMMETRIC EXCLUSION MODEL USING A MATRIX FORMULATION [J].
DERRIDA, B ;
EVANS, MR ;
HAKIM, V ;
PASQUIER, V .
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 1993, 26 (07) :1493-1517
[6]   MOBILITY OF A REPTATING POLYMER [J].
DUKE, TAJ ;
SEMENOV, AN ;
VIOVY, JL .
PHYSICAL REVIEW LETTERS, 1992, 69 (22) :3260-3263
[7]   MONTE-CARLO REPTATION MODEL OF GEL-ELECTROPHORESIS - STEADY-STATE BEHAVIOR [J].
DUKE, TAJ .
JOURNAL OF CHEMICAL PHYSICS, 1990, 93 (12) :9049-9055
[8]   TUBE MODEL OF FIELD-INVERSION ELECTROPHORESIS [J].
DUKE, TAJ .
PHYSICAL REVIEW LETTERS, 1989, 62 (24) :2877-2880
[9]   MONTE-CARLO REPTATION MODEL OF GEL-ELECTROPHORESIS - RESPONSE TO FIELD PULSES [J].
DUKE, TAJ .
JOURNAL OF CHEMICAL PHYSICS, 1990, 93 (12) :9055-9061
[10]   REPTATION MODELS FOR ELECTROPHORESIS [J].
KOOIMAN, A ;
VANLEEUWEN, JMJ .
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 1993, 194 (1-4) :163-172