Residual dipolar couplings in NMR structure analysis

被引:140
作者
Lipsitz, RS [1 ]
Tjandra, N [1 ]
机构
[1] NHLBI, Biophys Chem Lab, NIH, Bethesda, MD 20892 USA
来源
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE | 2004年 / 33卷
关键词
nuclear magnetic resonance; RDCs; structure determination; domain orientation;
D O I
10.1146/annurev.biophys.33.110502.140306
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Residual dipolar couplings (RDCs) have recently emerged as a new tool in nuclear magnetic resonance (NMR) with which to study macromolecular structure and function in a solution environment. RDCs are complementary to the more conventional use of NOES to provide structural information. While NOES are local-distance restraints, RDCs provide long-range orientational information. RDCs are now widely utilized in structure calculations. Increasingly, they are being used in novel applications to address complex issues in structural biology such as the accurate determination of the global structure of oligonucleotides and the relative orientation of protein domains. This review briefly describes the theory and methods for obtaining RDCs and then describes the range of biological applications where RDCs have been used.
引用
收藏
页码:387 / 413
页数:29
相关论文
共 78 条
[1]   Molecular symmetry as an aid to geometry determination in ligand protein complexes [J].
Al-Hashimi, HM ;
Bolon, PJ ;
Prestegard, JH .
JOURNAL OF MAGNETIC RESONANCE, 2000, 142 (01) :153-158
[2]   Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings [J].
Al-Hashimi, HM ;
Gosser, Y ;
Gorin, A ;
Hu, WD ;
Majumdar, A ;
Patel, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 315 (02) :95-102
[3]   Residual dipolar couplings: Synergy between NMR and structural genomics [J].
Al-Hashimi, HM ;
Patel, DJ .
JOURNAL OF BIOMOLECULAR NMR, 2002, 22 (01) :1-8
[4]   Field- and phage-induced dipolar couplings in a homodimeric DNA quadruplex, relative orientation of G•(C-A) triad and G-tetrad motifs and direct determination of C2 symmetry axis orientation [J].
Al-Hashimi, HM ;
Majumdar, A ;
Gorin, A ;
Kettani, A ;
Skripkin, E ;
Patel, DJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (04) :633-640
[5]   Recognition of protein folds via dipolar couplings [J].
Annila, A ;
Aitio, H ;
Thulin, E ;
Drakenberg, T .
JOURNAL OF BIOMOLECULAR NMR, 1999, 14 (03) :223-230
[6]  
Banci L, 1997, PROTEINS, V29, P68, DOI 10.1002/(SICI)1097-0134(199709)29:1<68::AID-PROT5>3.0.CO
[7]  
2-B
[8]   Structural origins of adenine-tract bending [J].
Barbic, A ;
Zimmer, DP ;
Crothers, DM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (05) :2369-2373
[9]   Dipolar couplings in macromolecular structure determination [J].
Bax, A ;
Kontaxis, G ;
Tjandra, N .
NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PT B, 2001, 339 :127-174
[10]   Refinement of the structure of protein-RNA complexes by residual dipolar coupling analysis [J].
Bayer, P ;
Varani, L ;
Varani, G .
JOURNAL OF BIOMOLECULAR NMR, 1999, 14 (02) :149-155