Multi-tissue gene-expression analysis in a mouse model of thyroid hormone resistance

Background: Resistance to thyroid hormone (RTH) is caused by mutations of the thyroid hormone receptor beta (TRbeta) gene. To understand the transcriptional program underlying TRbeta mutant-induced phenotypic expression of RTH, cDNA microarrays were used to profile the expression of 11,500 genes in a mouse model of human RTH. Results: We analyzed transcript levels in cerebellum, heart and white adipose tissue from a knock-in mouse (TRbeta(PV/PV) mouse) that harbors a human mutation (referred to as PV) and faithfully reproduces human RTH. Because TRbeta(PV/PV) mice have elevated thyroid hormone (T3), to define T3-responsive genes in the context of normal TRbeta, we also analyzed T3 effects in hyperthyroid wildtype gender-matched littermates. Microarray analysis revealed 163 genes responsive to T3 treatment and 187 genes differentially expressed between TRbeta(PV/PV) mice and wild-type littermates. Both the magnitude and gene make-up of the transcriptional response varied widely across tissues and conditions. We identified genes modulated in T3-dependent PV-independent, T3- and PV-dependent, and T3- independent PV-dependent pathways that illuminated the biological consequences of PV action in vivo. Most T3- responsive genes that were dysregulated in the heart and white adipose tissue of TRbeta(PV/PV) mice were repressed in T3- treated wild-type mice and upregulated in TRbeta(PV/PV) mice, suggesting the inappropriate activation of T3-suppressed genes in RTH. Conclusions: Comprehensive multi-tissue gene-expression analysis uncovered complex multiple signaling pathways that mediate the molecular actions of TRbeta mutants in vivo. In particular, the T3-independent mutant-dependent genomic response unveiled the contribution of a novel 'change-of-function' of TRbeta mutants to the pathogenesis of RTH. Thus, the molecular actions of TRbeta mutants are more complex than previously envisioned.