ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments

被引：355

作者：

Bond, Charles Simon ^{[1
]}

Schuettelkopf, Alexander Wolfgang ^{[2
]}

机构：

[1] Univ Western Australia, Sch Biomed Biomol & Chem Sci, Crawley, WA 6009, Australia

[2] Univ Dundee, Div Biol Chem & Drug Discovery, Sch Life Sci, Dundee DD1 5EH, Scotland

来源：

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2009年 / 65卷

关键词：

Bioinformatics; Presentation; Secondary structure; Sequence alignment; Structural biology;

D O I：

10.1107/S0907444909007835

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Marked-up sequence alignments typically provide the central figure in articles describing proteins, whether in the fields of biochemistry, bioinformatics or structural biology. The generation of these figures is often unwieldy: interactive programs are often aesthetically limited and the use of batch programs requires the repetitive iterative editing of scripts. ALINE is a portable interactive graphical sequence-alignment editor implemented in Perl/Tk which produces publication-quality sequence-alignment figures where 'what you see is what you get'. ALINE is freely available for download from http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/.

引用

页码：510 / 512

页数：3

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