Barrier-free proton transfer in anionic complex of thymine with glycine

被引:39
作者
Dabkowska, I
Rak, J
Gutowski, M [1 ]
Nilles, JM
Stokes, ST
Radisic, D
Bowen, KH
机构
[1] NW Natl Lab, Div Chem Sci, Richland, WA 99352 USA
[2] Univ Gdansk, Dept Chem, PL-80952 Gdansk, Poland
[3] Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague 6, Czech Republic
[4] Johns Hopkins Univ, Dept Chem, Baltimore, MD 21218 USA
关键词
D O I
10.1039/b406455k
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We report the photoelectron spectrum of the thymine-glycine anionic complex (TG(-)) recorded with low energy photons (2.540 eV). The spectrum reveals a broad feature with a maximum between 1.6-1.9 eV. The measured electron vertical detachment energy is too large to be attributed to a complex in which an anion of intact thymine is solvated by glycine, or vice versa. The experimental data are paralleled by electronic structure calculations carried out at the density functional theory level with 6-31++G** basis sets and the B3LYP and MPW1K exchange-correlation functionals. The critical structures are further examined at the second order Moller-Plesset level of theory. The results of calculations indicate that the excess electron attachment to the complex induces an intermolecular barrier-free proton transfer from the carboxylic group of glycine to the O8 atom of thymine. As a result, the four most stable structures of the thymine-glycine anionic complex can be characterized as a neutral radical of hydrogenated thymine solvated by an anion of deprotonated glycine. The calculated vertical electron detachment energies for the four most stable anionic complexes lie in a range 1.6-1.9 eV, in excellent agreement with the maximum of the photoelectron peak.
引用
收藏
页码:4351 / 4357
页数:7
相关论文
共 44 条
[1]   Electron attachment energies of the DNA bases [J].
Aflatooni, K ;
Gallup, GA ;
Burrow, PD .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (31) :6205-6207
[2]   Temporary anion states of selected amino acids [J].
Aflatooni, K ;
Hitt, B ;
Gallup, GA ;
Burrow, FD .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (14) :6489-6494
[3]   Photocleavage of nucleic acids [J].
Armitage, B .
CHEMICAL REVIEWS, 1998, 98 (03) :1171-1200
[4]   Mechanism for damage to DNA by low-energy electrons [J].
Barrios, R ;
Skurski, P ;
Simons, J .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (33) :7991-7994
[5]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[6]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[7]  
Boudaïffa B, 2000, SCIENCE, V287, P1658, DOI 10.1126/science.287.5458.1658
[8]   Oxidative nucleobase modifications leading to strand scission [J].
Burrows, CJ ;
Muller, JG .
CHEMICAL REVIEWS, 1998, 98 (03) :1109-1151
[9]   PHOTOELECTRON-SPECTROSCOPY OF THE NEGATIVE-ION SEO- [J].
COE, JV ;
SNODGRASS, JT ;
FREIDHOFF, CB ;
MCHUGH, KM ;
BOWEN, KH .
JOURNAL OF CHEMICAL PHYSICS, 1986, 84 (02) :618-625
[10]   PHOTOELECTRON-SPECTROSCOPY OF THE NEGATIVE CLUSTER IONS NO-(N2O)N=1,2 [J].
COE, JV ;
SNODGRASS, JT ;
FREIDHOFF, CB ;
MCHUGH, KM ;
BOWEN, KH .
JOURNAL OF CHEMICAL PHYSICS, 1987, 87 (08) :4302-4309