Visualization for genomics: The microbial genome viewer

被引：51

作者：

Kerkhoven, R

van Enckevort, FHJ

Boekhorst, J

Molenaar, D

Siezen, RJ

机构：

[1] Univ Nijmegen, Ctr Mol & Biomol Informat, NL-6500 GL Nijmegen, Netherlands

[2] NIZO Food Res, NL-6710 BA Ede, Netherlands

[3] Wageningen Ctr Food Sci, NL-6700 AN Wageningen, Netherlands

来源：

BIOINFORMATICS | 2004年 / 20卷 / 11期

关键词：

D O I：

10.1093/bioinformatics/bth159

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

A Web-based visualization tool, the Microbial Genome Viewer, is presented that allows the user to combine complex genomic data in a highly interactive way. This Web tool enables the interactive generation of chromosome wheels and linear genome maps from genome annotation data stored in a MySQL database. The generated images are in scalable vector graphics (SVG) format, which is suitable for creating high-quality scalable images and dynamic Web representations. Gene-related data such as transcriptome and time-course microarray experiments can be superimposed on the maps for visual inspection.

引用

页码：1812 / 1814

页数：3

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