Development of the Minimum Information Specification for in situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)

被引：11

作者：

Deutsch, Eric W.

Ball, Catherine A.

Bova, G. Steven

Brazma, Alvis

Bumgarner, Roger E.

Campbell, David

Causton, Helen C.

Christiansen, Jeff

Davidson, Duncan

Eichner, Lillian J.

Goo, Young Ah

Grimmond, Sean

Henrich, Thorsten

Johnson, Michael H.

Korb, Martin

Mills, Jason C.

Oudes, Asa

Parkinson, Helen E.

Pascal, Laura E.

Quackenbush, John

Ramialison, Mirana

Ringwald, Martin

Sansone, Susanna-A.

Sherlock, Gavin

Stoeckert, Christian J., Jr.

Swedlow, Jason

Taylor, Ronald C.

Walashek, Laura

Zhou, Yi

Liu, Alvin Y.

True, Lawrence D.

机构：

[1] Inst Syst Biol, Seattle, WA 98103 USA

[2] Stanford Univ, Sch Med, Dept Biochem, Stanford, CA 94305 USA

[3] Johns Hopkins Univ, Sch Med, Dept Pathol, Baltimore, MD USA

[4] Johns Hopkins Univ, Sch Med, Dept Hlth Informat Sci, Baltimore, MD USA

[5] Johns Hopkins Univ, Sch Med, Dept Med Genet, Baltimore, MD USA

[6] Johns Hopkins Univ, Sch Med, Dept Oncol, Baltimore, MD USA

[7] Johns Hopkins Univ, Sch Med, Dept Urol, Baltimore, MD USA

[8] EBI, EMBL, Cambridge, England

[9] Univ Washington, Dept Microbiol, Seattle, WA 98195 USA

[10] Western Gen Hosp, MRC, Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland

[11] Imperial Coll Sch Med Microarray Ctr, CSC, London, England

[12] Univ Washington, Dept Urol, Seattle, WA 98195 USA

[13] Univ Queensland, Inst Mol Biosci, St Lucia, Qld, Australia

[14] EMBL Heidelberg, Heidelberg, Germany

[15] Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO USA

[16] Dana Farber Canc Inst, Boston, MA 02115 USA

[17] Jackson Lab, Bar Harbor, ME 04609 USA

[18] Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

[19] Univ Penn, Ctr Bioinformat, Philadelphia, PA 19104 USA

[20] Univ Penn, Dept Genet, Philadelphia, PA 19104 USA

[21] Univ Dundee, Wellcome Trust Bioctr, Div Gene Regulat & Express, Dundee, Scotland

[22] Pacific NW Natl Lab, Richland, WA 99352 USA

[23] Childrens Hosp, Boston, MA 02115 USA

[24] Harvard Univ, Sch Med, Boston, MA 02115 USA

[25] Univ Washington, Dept Pathol, Seattle, WA 98195 USA

来源：

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY | 2006年 / 10卷 / 02期

基金：

英国医学研究理事会;

关键词：

D O I：

10.1089/omi.2006.10.205

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

We describe the creation process of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Modeled after the existing minimum information specification for microarray data, we created a new specification for gene expression localization experiments, initially to facilitate data sharing within a consortium. After successful use within the consortium, the specification was circulated to members of the wider biomedical research community for comment and refinement. After a period of acquiring many new suggested requirements, it was necessary to enter a final phase of excluding those requirements that were deemed inappropriate as a minimum requirement for all experiments. The full specification will soon be published as a version 1.0 proposal to the community, upon which a more full discussion must take place so that the final specification may be achieved with the involvement of the whole community. This paper is part of the special issue of OMICS on data standards.

引用

页码：205 / 208

页数：4

共 8 条

[1]

BALL CA, 2006, OMICS

[2] Minimum information about a microarray experiment (MIAME) - toward standards for microarray data [J].

Brazma, A ;

Hingamp, P ;

Quackenbush, J ;

Sherlock, G ;

Spellman, P ;

Stoeckert, C ;

Aach, J ;

Ansorge, W ;

Ball, CA ;

Causton, HC ;

Gaasterland, T ;

Glenisson, P ;

Holstege, FCP ;

Kim, IF ;

Markowitz, V ;

Matese, JC ;

Parkinson, H ;

Robinson, A ;

Sarkans, U ;

Schulze-Kremer, S ;

Stewart, J ;

Taylor, R ;

Vilo, J ;

Vingron, M .

NATURE GENETICS, 2001, 29 (04) :365-371

[3] EMAGE: a spatial database of gene expression patterns during mouse embryo development [J].

Christiansen, Jeffrey H. ;

Yang, Yiya ;

Venkataraman, Shanmugasundaram ;

Richardson, Lorna ;

Stevenson, Peter ;

Burton, Nicholas ;

Baldock, Richard A. ;

Davidson, Duncan R. .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D637-D641

[4]

DEUTSCH EW, 2006, UNPUB NATURE BIOTECH

[5] The mouse Gene Expression Database (GXD): updates and enhancements [J].

Hill, DP ;

Begley, DA ;

Finger, JH ;

Hayamizu, TF ;

McCright, IJ ;

Smith, CM ;

Beal, JS ;

Corbani, LE ;

Blake, JA ;

Eppig, JT ;

Kadin, JA ;

Richardson, JE ;

Ringwald, M .

NUCLEIC ACIDS RESEARCH, 2004, 32 :D568-D571

[6]

JONES AR, OMICS

[7]

Spellman PT, 2002, GENOME BIOL, V3

[8]

WHETZEL PL, 2006, OMICS

← 1 →