The genome of the stress-tolerant wild tomato species Solanum pennellii

被引：319

作者：

Bolger, Anthony ^{[1
,2
]}

Scossa, Federico ^{[3
,4
]}

Bolger, Marie E. ^{[1
,5
]}

Lanz, Christa ^{[6
]}

Maumus, Florian ^{[7
]}

Tohge, Takayuki ^{[3
]}

Quesneville, Hadi ^{[7
]}

Alseekh, Saleh ^{[3
]}

Sorensen, Iben ^{[8
]}

Lichtenstein, Gabriel ^{[9
,10
]}

Fich, Eric A. ^{[8
]}

Conte, Mariana ^{[9
,10
]}

Keller, Heike ^{[6
]}

Schneeberger, Korbinian ^{[6
,11
]}

Schwacke, Rainer ^{[1
,5
]}

Ofner, Itai ^{[12
]}

Vrebalov, Julia ^{[13
]}

Xu, Yimin ^{[13
]}

Osorio, Sonia ^{[3
,14
]}

Aflitos, Saulo Alves ^{[15
]}

Schijlen, Elio ^{[15
]}

Jimenez-Gomez, Jose M. ^{[16
,17
]}

Ryngajllo, Malgorzata ^{[1
]}

Kimura, Seisuke ^{[18
]}

Kumar, Ravi ^{[18
]}

Koenig, Daniel ^{[6
,18
]}

Headland, Lauren R. ^{[18
]}

Maloof, Julin N. ^{[18
]}

Sinha, Neelima ^{[18
]}

van Ham, Roeland C. H. J. ^{[15
]}

Lankhorst, Rene Klein ^{[15
]}

Mao, Linyong ^{[13
]}

Vogel, Alexander ^{[2
]}

Arsova, Borjana ^{[19
]}

Panstruga, Ralph ^{[20
]}

Fei, Zhangjun ^{[13
,21
]}

Rose, Jocelyn K. C. ^{[8
]}

Zamir, Dani ^{[12
]}

Carrari, Fernando F ^{[9
,10
]}

Giovannoni, James J. ^{[13
,21
]}

Weigel, Detlef ^{[6
]}

Usadel, Bjoern ^{[1
,2
,5
]}

Fernie, Alisdair R. ^{[3
]}

机构：

[1] Max Planck Inst Mol Plant Physiol, Dept Metab Networks, Potsdam Golm, Germany

[2] Rhein Westfal TH Aachen, IBMG, Inst Biol 1, Aachen, Germany

[3] Max Planck Inst Mol Plant Physiol, Dept Mol Physiol, Potsdam Golm, Germany

[4] Ctr Ric Orticoltura, Consiglio Ric Sperimentaz Agr, Pontecagnano, Italy

[5] Forschungszentrum Julich, IBG 2, D-52425 Julich, Germany

[6] Max Planck Inst Dev Biol, Dept Mol Biol, Tubingen, Germany

[7] INRA Versailles Grignon, French Natl Inst Agr Res INRA, Res Unit Genom Info URGI UR1164, Versailles, France

[8] Cornell Univ, Dept Plant Biol, Ithaca, NY USA

[9] INTA, CICVyA, Inst Biotecnol, Castelar, Argentina

[10] Consejo Nacl Invest Cient & Tecn, Castelar, Argentina

[11] Max Planck Inst Plant Breeding Res, Dept Plant Dev Biol, Cologne, Germany

[12] Hebrew Univ Jerusalem, Fac Agr, IL-76100 Rehovot, Israel

[13] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA

[14] Univ Malaga, Inst Hortofruticultura Subtrop & Mediterrane La M, Dept Mol Biol & Biochem, E-29071 Malaga, Spain

[15] Univ Wageningen & Res Ctr, Wageningen, Netherlands

[16] Max Planck Inst Plant Breeding Res, Dept Plant Breeding & Genet, Cologne, Germany

[17] INRA, Inst Jean Pierre Bourgin, UMR 1318, F-78026 Versailles, France

[18] Univ Calif Davis, Dept Plant Biol, Davis, CA USA

[19] Univ Dusseldorf, Dusseldorf, Germany

[20] Rhein Westfal TH Aachen, Inst Biol 1, Unit Plant Mol Cell Biol, Aachen, Germany

[21] USDA, Robert W Holley Ctr Agr & Hlth, Ithaca, NY USA

来源：

NATURE GENETICS | 2014年 / 46卷 / 09期

基金：

美国国家科学基金会; 美国食品与农业研究所;

关键词：

INTROGRESSION LINES; GENE-EXPRESSION; FRUIT; QTL; ACCUMULATION; EVOLUTION; TRICHOMES; RESPONSES; PLANTS; TRAITS;

D O I：

10.1038/ng.3046

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum(1). Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance(2). Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.

引用

页码：1034 / +

页数：6

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