First-shell solvation of ion pairs: Correction of systematic errors in implicit solvent models

被引:75
作者
Yu, ZY
Jacobson, MP
Josovitz, J
Rapp, CS
Friesner, RA [1 ]
机构
[1] Columbia Univ, Dept Chem, New York, NY 10027 USA
[2] Columbia Univ, Ctr Biomol Simulat, New York, NY 10027 USA
[3] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
[4] Yeshiva Univ, Stern Coll Women, Dept Chem, New York, NY 10016 USA
关键词
D O I
10.1021/jp037821l
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Salt bridges play an important role in protein stability, protein-protein interactions, and protein folding. The electrostatic solvation free energies of the analogues of charged amino acid side chains were calculated using both explicit solvent free energy perturbation methods and implicit solvation models such as Poisson Boltzmann and surface-generalized Born model. A systematic difference between explicit and implicit solvent results was observed, which we attribute to a specific first-shell solvation effect, which we refer to as bridging waters. We present a method for including a single explicit bridging water between the pairs that improves the implicit solvation models significantly.
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页码:6643 / 6654
页数:12
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