Genome-wide association study reveals genetic risk underlying Parkinson's disease

被引:1483
作者
Simon-Sanchez, Javier [2 ,3 ]
Schulte, Claudia [1 ,4 ]
Bras, Jose M. [2 ,5 ]
Sharma, Manu [1 ,4 ]
Gibbs, J. Raphael [2 ,6 ,7 ]
Berg, Daniela [1 ,4 ]
Paisan-Ruiz, Coro [6 ,7 ]
Lichtner, Peter [8 ]
Scholz, Sonja W. [2 ,6 ,7 ]
Hernandez, Dena G. [2 ,6 ,7 ]
Krueger, Rejko
Federoff, Monica [2 ]
Klein, Christine [9 ]
Goate, Alison [10 ,11 ]
Perlmutter, Joel [10 ,11 ]
Bonin, Michael [12 ]
Nalls, Michael A. [2 ]
Illig, Thomas [13 ]
Gieger, Christian [13 ]
Houlden, Henry [6 ,7 ]
Steffens, Michael [14 ]
Okun, Michael S. [15 ]
Racette, Brad A. [10 ,11 ]
Cookson, Mark R. [2 ]
Foote, Kelly D. [15 ]
Fernandez, Hubert H. [15 ]
Traynor, Bryan J. [2 ]
Schreiber, Stefan [16 ]
Arepalli, Sampath [2 ]
Zonozi, Ryan [2 ]
Gwinn, Katrina [17 ]
van der Brug, Marcel [2 ,18 ]
Lopez, Grisel [19 ]
Chanock, Stephen J. [20 ]
Schatzkin, Arthur [20 ]
Park, Yikyung [20 ]
Hollenbeck, Albert [21 ]
Gao, Jianjun [22 ]
Huang, Xuemei [23 ,24 ,25 ,26 ,27 ,28 ]
Wood, Nick W. [6 ,7 ]
Lorenz, Delia [29 ]
Deuschl, Guenther [29 ]
Chen, Honglei [22 ]
Riess, Olaf [12 ]
Hardy, John A. [6 ,7 ]
Singleton, Andrew B. [2 ]
Gasser, Thomas [1 ,4 ]
机构
[1] Univ Tubingen, Hertie Inst Clin Brain Res, Dept Neurodegenerat Dis, Tubingen, Germany
[2] NIA, Neurogenet Lab, NIH, Bethesda, MD 20892 USA
[3] Vrije Univ Amsterdam Med Ctr, Sect Med Genom, Dept Clin Genet, Amsterdam, Netherlands
[4] German Ctr Neurodegenerat Dis, Tubingen, Germany
[5] Univ Coimbra, Ctr Neurosci & Cell Biol, Coimbra, Portugal
[6] UCL, Dept Mol Neurosci, Inst Neurol, London, England
[7] UCL, Reta Lila Weston Labs, Inst Neurol, London, England
[8] German Res Ctr Environm Hlth, Helmholtz Zentrum Munchen, Inst Human Genet, Neuherberg, Germany
[9] Univ Lubeck, Dept Neurol, Sect Clin & Mol Neurogenet, Lubeck, Germany
[10] Washington Univ, Sch Med, Dept Psychiat, St Louis, MO 63110 USA
[11] Washington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
[12] Univ Tubingen, Inst Human Genet, Dept Med Genet, Tubingen, Germany
[13] German Res Ctr Environm Hlth, Helmholtz Zentrum Munchen, Inst Epidemiol, Neuherberg, Germany
[14] Univ Bonn, Inst Med Biometry Informat & Epidemiol, D-5300 Bonn, Germany
[15] Univ Florida, Movement Disorders Ctr, Gainesville, FL USA
[16] Univ Kiel, Inst Klin Mol Biol, D-24098 Kiel, Germany
[17] Baylor Coll Med, Dept Mol & Human Genet, Houston, TX 77030 USA
[18] Scripps Res Inst, Dept Neurosci, Scripps, FL USA
[19] NINDS, Parkinsons Dis Clin, NIH, Bethesda, MD 20892 USA
[20] NCI, Div Canc Epidemiol & Genet, NIH, Dept Hlth & Human Serv, Bethesda, MD 20892 USA
[21] AARP, Washington, DC USA
[22] Natl Inst Environm Hlth Sci, Epidemiol Branch, NIH, Res Triangle Pk, NC USA
[23] Penn State Univ, Milton S Hershey Med Ctr, Dept Neurol, Hershey, PA 17033 USA
[24] Penn State Univ, Milton S Hershey Med Ctr, Dept Radiol, Hershey, PA 17033 USA
[25] Penn State Univ, Milton S Hershey Med Ctr, Dept Neurosurg, Hershey, PA 17033 USA
[26] Penn State Univ, Milton S Hershey Med Ctr, Dept Pharmacol, Hershey, PA 17033 USA
[27] Penn State Univ, Milton S Hershey Med Ctr, Dept Kinesiol, Hershey, PA 17033 USA
[28] Penn State Univ, Milton S Hershey Med Ctr, Dept Bioengn, Hershey, PA 17033 USA
[29] Univ Kiel, Neurol Klin, Univ Klinikum Schleswig Holstein, D-2300 Kiel, Germany
基金
美国国家卫生研究院; 英国医学研究理事会;
关键词
PROGRESSIVE SUPRANUCLEAR PALSY; LINKAGE DISEQUILIBRIUM; TAU GENE; HAPLOTYPE; MUTATIONS; SYSTEM; SNCA;
D O I
10.1038/ng.487
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We performed a genome-wide association study (GWAS) in 1,713 individuals of European ancestry with Parkinson's disease (PD) and 3,978 controls. After replication in 3,361 cases and 4,573 controls, we observed two strong association signals, one in the gene encoding a-synuclein (SNCA; rs2736990, OR = 1.23, P = 2.24 x 10(-16)) and another at the MAPT locus (rs393152, OR = 0.77, P = 1.95 x 10(-16)). We exchanged data with colleagues performing a GWAS in Japanese PD cases. Association to PD at SNCA was replicated in the Japanese GWAS1, confirming this as a major risk locus across populations. We replicated the effect of a new locus detected in the Japanese cohort (PARK16, rs823128, OR = 0.66, P = 7.29 x 10(-8)) and provide supporting evidence that common variation around LRRK2 modulates risk for PD (rs1491923, OR = 1.14, P = 1.55 x 10(-5)). These data demonstrate an unequivocal role for common genetic variants in the etiology of typical PD and suggest population-specific genetic heterogeneity in this disease.
引用
收藏
页码:1308 / U68
页数:7
相关论文
共 22 条
  • [1] Association of an extended haplotype in the tau gene with progressive supranuclear palsy
    Baker, M
    Litvan, I
    Houlden, H
    Adamson, J
    Dickson, D
    Perez-Tur, J
    Hardy, J
    Lynch, T
    Bigio, E
    Hutton, M
    [J]. HUMAN MOLECULAR GENETICS, 1999, 8 (04) : 711 - 715
  • [2] Haploview: analysis and visualization of LD and haplotype maps
    Barrett, JC
    Fry, B
    Maller, J
    Daly, MJ
    [J]. BIOINFORMATICS, 2005, 21 (02) : 263 - 265
  • [3] Effect of allelic variation at the NACP-Rep1 repeat upstream of the α-synuclein gene (SNCA) on transcription in a cell culture luciferase reporter system
    Chiba-Falek, O
    Nussbaum, RL
    [J]. HUMAN MOLECULAR GENETICS, 2001, 10 (26) : 3101 - 3109
  • [4] Genome-wide genotyping in Parkinson's disease and neurologically normal controls:: first stage analysis and public release of data
    Fung, Hon-Chung
    Scholz, Sonja
    Matarin, Mar
    Simon-Sanchez, Javier
    Hernandez, Dena
    Britton, Angela
    Gibbs, J. Raphael
    Langefeld, Carl
    Stiegert, Matt L.
    Schymick, Jennifer
    Okun, Michael S.
    Mandel, Ronald J.
    Fernandez, Hubert H.
    Foote, Kelly D.
    Rodriguez, Ramon L.
    Peckham, Elizabeth
    De Vrieze, Fabienne Wavrant
    Gwinn-Hardy, Katrina
    Hardy, John A.
    Singleton, Andrew
    [J]. LANCET NEUROLOGY, 2006, 5 (11) : 911 - 916
  • [5] The structure of haplotype blocks in the human genome
    Gabriel, SB
    Schaffner, SF
    Nguyen, H
    Moore, JM
    Roy, J
    Blumenstiel, B
    Higgins, J
    DeFelice, M
    Lochner, A
    Faggart, M
    Liu-Cordero, SN
    Rotimi, C
    Adeyemo, A
    Cooper, R
    Ward, R
    Lander, ES
    Daly, MJ
    Altshuler, D
    [J]. SCIENCE, 2002, 296 (5576) : 2225 - 2229
  • [6] The International HapMap Project
    Gibbs, RA
    Belmont, JW
    Hardenbol, P
    Willis, TD
    Yu, FL
    Yang, HM
    Ch'ang, LY
    Huang, W
    Liu, B
    Shen, Y
    Tam, PKH
    Tsui, LC
    Waye, MMY
    Wong, JTF
    Zeng, CQ
    Zhang, QR
    Chee, MS
    Galver, LM
    Kruglyak, S
    Murray, SS
    Oliphant, AR
    Montpetit, A
    Hudson, TJ
    Chagnon, F
    Ferretti, V
    Leboeuf, M
    Phillips, MS
    Verner, A
    Kwok, PY
    Duan, SH
    Lind, DL
    Miller, RD
    Rice, JP
    Saccone, NL
    Taillon-Miller, P
    Xiao, M
    Nakamura, Y
    Sekine, A
    Sorimachi, K
    Tanaka, T
    Tanaka, Y
    Tsunoda, T
    Yoshino, E
    Bentley, DR
    Deloukas, P
    Hunt, S
    Powell, D
    Altshuler, D
    Gabriel, SB
    Qiu, RZ
    [J]. NATURE, 2003, 426 (6968) : 789 - 796
  • [7] ACCURACY OF CLINICAL-DIAGNOSIS OF IDIOPATHIC PARKINSONS-DISEASE - A CLINICOPATHOLOGICAL STUDY OF 100 CASES
    HUGHES, AJ
    DANIEL, SE
    KILFORD, L
    LEES, AJ
    [J]. JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY, 1992, 55 (03) : 181 - 184
  • [8] Missense and splice site mutations in tau associated with FTDP-17: Multiple pathogenic mechanisms
    Hutton, M
    [J]. NEUROLOGY, 2001, 56 (11) : S21 - S25
  • [9] TAU Haplotype and the Saitohin Q7R Gene Polymorphism Do Not Influence CSF Tau in Alzheimer's Disease and Are Not Associated with Frontotemporal Dementia or Parkinson's Disease
    Johansson, Annica
    Zetterberg, Henrik
    Hakansson, Anna
    Nissbrandt, Hans
    Blennow, Kaj
    [J]. NEURODEGENERATIVE DISEASES, 2005, 2 (01) : 28 - 35
  • [10] Collaborative analysis of alpha-synuclein gene promoter variability and Parkinson disease
    Maraganore, Demetrius M.
    de Andrade, Mariza
    Elbaz, Alexis
    Farrer, Matthew J.
    Ioannidis, John P.A.
    Krueger, Rejko
    Rocca, Walter A.
    Schneider, Nicole K.
    Lesnick, Timothy G.
    Lincoln, Sarah J.
    Hulihan, Mary M.
    Aasly, Jan O.
    Ashizawa, Tetsuo
    Chartier-Harlin, Marie-Christine
    Checkoway, Harvey
    Ferrarese, Carlo
    Hadjigeorgiou, Georgios
    Hattori, Nobutaka
    Kawakami, Hideshi
    Lambert, Jean-Charles
    Lynch, Timothy
    Mellick, George D.
    Papapetropoulos, Spiridon
    Parsian, Abbas
    Quattrone, Aldo
    Riess, Olaf
    Tan, Eng-King
    Van Broeckhoven, Christine
    [J]. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2006, 296 (06): : 661 - 670