A mild chemically cleavable linker system for functional proteomic applications

被引:131
作者
Verhelst, Steven H. L.
Fonovic, Marko
Bogyo, Matthew
机构
[1] Stanford Univ, Sch Med, Dept Pathol, Stanford, CA 94305 USA
[2] Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USA
[3] Josef Stefan Inst, Dept Biochem & Mol Biol, Ljubljana 1000, Slovenia
关键词
activity-based probes; affinity purification; cleavable linkers; mass spectrometry; proteomics;
D O I
10.1002/anie.200603811
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
(Chemical Equation Presented) An amicable split: Small-molecule probes can be applied for the enrichment of specific protein targets from a complex proteome. A cleavable linker system, which prevents the release of unwanted, nonspecifically bound proteins, can be used for a very mild and highly selective cleavage of probe-labeled proteins. © 2007 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:1284 / 1286
页数:3
相关论文
共 17 条
[1]  
BOYO M, UNPUB
[2]   I-125-LABELED CROSSLINKING REAGENT THAT IS HYDROPHILIC, PHOTOACTIVATABLE, AND CLEAVABLE THROUGH AN AZO LINKAGE [J].
DENNY, JB ;
BLOBEL, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1984, 81 (17) :5286-5290
[3]   Synthesis of acid-cleavable light isotope-coded affinity tags (ICAT-L) for potential use in proteomic expression profiling analysis [J].
Fauq, AH ;
Kache, R ;
Khan, MA ;
Vega, IE .
BIOCONJUGATE CHEMISTRY, 2006, 17 (01) :248-254
[4]   Epoxide electrophiles as activity-dependent cysteine protease profiling and discovery tools [J].
Greenbaum, D ;
Medzihradszky, KF ;
Burlingame, A ;
Bogyo, M .
CHEMISTRY & BIOLOGY, 2000, 7 (08) :569-581
[5]   Small molecule affinity fingerprinting:: a tool for enzyme family subclassification, target identification, and inhibitor design [J].
Greenbaum, DC ;
Arnold, WD ;
Lu, F ;
Hayrapetian, L ;
Baruch, A ;
Krumrine, J ;
Toba, S ;
Chehade, K ;
Brömme, D ;
Kuntz, ID ;
Bogyo, M .
CHEMISTRY & BIOLOGY, 2002, 9 (10) :1085-1094
[6]   Interior surface modification of bacteriophage MS2 [J].
Hooker, JM ;
Kovacs, EW ;
Francis, MB .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (12) :3718-3719
[7]   IDENTIFICATION OF PEANUT AGGLUTININ RECEPTORS ON HUMAN-ERYTHROCYTE GHOSTS BY AFFINITY CROSSLINKING USING A NEW CLEAVABLE HETEROBIFUNCTIONAL REAGENT [J].
JAFFE, CL ;
LIS, H ;
SHARON, N .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1979, 91 (02) :402-409
[8]   NEW CLEAVABLE PHOTOREACTIVE HETEROBIFUNCTIONAL CROSS-LINKING REAGENTS FOR STUDYING MEMBRANE ORGANIZATION [J].
JAFFE, CL ;
LIS, H ;
SHARON, N .
BIOCHEMISTRY, 1980, 19 (19) :4423-4429
[9]   Current chemical tagging strategies for proteome analysis by mass spectrometry [J].
Leitner, A ;
Lindner, W .
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 2004, 813 (1-2) :1-26
[10]   IMPROVED SYNTHESIS AND IODINATION OF A CLEAVABLE PHOTOACTIVATED PROBE [J].
MURPHY, HR ;
HARRIS, HW .
ANALYTICAL BIOCHEMISTRY, 1987, 165 (01) :88-95