Simulation of the K-function in the analysis of spatial clustering for non-randomly distributed locations-Exemplified by bovine virus diarrhoea virus (BVDV) infection in Denmark

被引:21
作者
Ersboll, A. K. [1 ]
Ersboll, B. K. [2 ]
机构
[1] Univ Copenhagen, Fac Life Sci, Dept Large Anim Sci, DK-1870 Frederiksberg C, Denmark
[2] Tech Univ Denmark, DTU Informat, DK-2800 Lyngby, Denmark
关键词
K-function; Simulated null hypothesis K-function; Non-randomness of herd locations; BVDV; 2ND-ORDER ANALYSIS; CATTLE;
D O I
10.1016/j.prevetmed.2009.05.004
中图分类号
S85 [动物医学(兽医学)];
学科分类号
0906 ;
摘要
The K-function is often used to detect spatial clustering in spatial point processes, e.g. clustering of infected herds. Clustering is identified by testing the observed K-function for complete spatial randomness modelled, e.g. by a homogeneous Poisson process. The approach provides information about spatial clustering as well as the scale of distances of clustering. However, there are several problems related to applying the K-function, e.g. estimation of the size of the study area and the assumption about modelling spatial random distribution of the events by, e.g. a homogeneous Poisson process. The objective of the present study was to develop a null hypothesis version of the K-function that overcomes the assumption about a specific underlying spatial distribution characterising complete spatial randomness. Furthermore, the objective was to develop an approach that does not include the estimation of the size of the study area. The paper presents a simulation procedure to derive the null hypothesis version of the K-function. The null hypothesis version of the K-function is simulated by random sampling of N+ locations from the distribution of N observed locations (infected (N+) and non-infected (N-N+)). The differences between the empirical and the estimated null-hypothesis version of the K-function are plotted together with the 95% simulation envelopes versus the distance, h. In this way we test if the spatial distribution of the infected herds differs from the spatial distribution of the herd locations in general. The approach also overcomes edge effects and problems with complex shapes of the study region. An application to bovine virus diarrhoea virus (BVDV) infection in Denmark is described. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:64 / 71
页数:8
相关论文
共 30 条
[1]   Space-time clustering of ampicillin resistant Escherichia coli isolated from Danish pigs at slaughter between 1997 and 2005 [J].
Abatih, E. N. ;
Ersboll, A. K. ;
Wong, D. M. A. Lo Fo ;
Emborg, H. D. .
PREVENTIVE VETERINARY MEDICINE, 2009, 89 (1-2) :90-101
[2]   Estimating transfer of bovine virus-diarrhoea virus in Danish cattle by use of register data [J].
Alban, L ;
Stryhn, H ;
Kjeldsenc, AM ;
Ersboll, AK ;
Skjoth, F ;
Christensen, J ;
Bitsch, V ;
Chriél, M ;
Stroger, U .
PREVENTIVE VETERINARY MEDICINE, 2001, 52 (02) :133-146
[3]  
[Anonymous], 1994, An introduction to the bootstrap: CRC press
[4]  
[Anonymous], 1991, STAT SPATIAL DATA
[5]  
[Anonymous], [No title captured], DOI DOI 10.2307/2985220
[6]   SPECTRAL ANALYSIS OF 2-DIMENSIONAL POINT PROCESSES [J].
BARTLETT, MS .
BIOMETRIKA, 1964, 51 (3-4) :299-&
[7]   Informing surveillance programmes by investigating spatial dependency of subclinical Salmonella infection [J].
Benschop, J. ;
Stevenson, M. A. ;
Dahl, J. ;
Morris, R. S. ;
French, N. P. .
EPIDEMIOLOGY AND INFECTION, 2009, 137 (09) :1348-1359
[8]   THE DETECTION OF CLUSTERS IN RARE DISEASES [J].
BESAG, J ;
NEWELL, J .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY, 1991, 154 :143-155
[9]  
BOLIN SR, 1985, AM J VET RES, V46, P573
[10]   EXPERIMENTAL PRODUCTION OF FATAL MUCOSAL DISEASE IN CATTLE [J].
BROWNLIE, J ;
CLARKE, MC ;
HOWARD, CJ .
VETERINARY RECORD, 1984, 114 (22) :535-536