Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

被引:481
作者
Fawcett, Jeffrey A. [1 ,2 ]
Maere, Steven [1 ,2 ]
Van de Peer, Yves [1 ,2 ]
机构
[1] Flanders Inst Biotechnol, Dept Plant Syst Biol, B-9052 Ghent, Belgium
[2] Univ Ghent, Dept Plant Biotechnol & Genet, B-9052 Ghent, Belgium
关键词
angiosperms; eudicots; Cretaceous-Tertiary boundary; penalized likelihood; polyploidy; GENE-EXPRESSION; EVOLUTION; DUPLICATION; DIVERGENCE; POLYPLOIDY; CONSEQUENCES; HYBRIDIZATION; ANGIOSPERMS; SPECIATION; BOUNDARY;
D O I
10.1073/pnas.0900906106
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Most flowering plants have been shown to be ancient polyploids that have undergone one or more whole genome duplications early in their evolution. Furthermore, many different plant lineages seem to have experienced an additional, more recent genome duplication. Starting from paralogous genes lying in duplicated segments or identified in large expressed sequence tag collections, we dated these youngest duplication events through penalized likelihood phylogenetic tree inference. We show that a majority of these independent genome duplications are clustered in time and seem to coincide with the Cretaceous-Tertiary (KT) boundary. The KT extinction event is the most recent mass extinction caused by one or more catastrophic events such as a massive asteroid impact and/or increased volcanic activity. These events are believed to have generated global wildfires and dust clouds that cut off sunlight during long periods of time resulting in the extinction of approximate to 60% of plant species, as well as a majority of animals, including dinosaurs. Recent studies suggest that polyploid species can have a higher adaptability and increased tolerance to different environmental conditions. We propose that polyploidization may have contributed to the survival and propagation of several plant lineages during or following the KT extinction event. Due to advantages such as altered gene expression leading to hybrid vigor and an increased set of genes and alleles available for selection, polyploid plants might have been better able to adapt to the drastically changed environment 65 million years ago.
引用
收藏
页码:5737 / 5742
页数:6
相关论文
共 55 条
[1]   Novel patterns of gene expression in polyploid plants [J].
Adams, KL ;
Wendel, JF .
TRENDS IN GENETICS, 2005, 21 (10) :539-543
[2]   Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years [J].
Barker, Michael S. ;
Kane, Nolan C. ;
Matvienko, Marta ;
Kozik, Alexander ;
Michelmore, W. ;
Knapp, Steven J. ;
Rieseberg, Loren H. .
MOLECULAR BIOLOGY AND EVOLUTION, 2008, 25 (11) :2445-2455
[3]   Understanding apomixis: Recent advances and remaining conundrums [J].
Bicknell, RA ;
Koltunow, AM .
PLANT CELL, 2004, 16 :S228-S245
[4]   Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes [J].
Blanc, G ;
Wolfe, KH .
PLANT CELL, 2004, 16 (07) :1667-1678
[5]   Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events [J].
Bowers, JE ;
Chapman, BA ;
Rong, JK ;
Paterson, AH .
NATURE, 2003, 422 (6930) :433-438
[6]   Polyploidy in arctic plants [J].
Brochmann, C ;
Brysting, AK ;
Alsos, IG ;
Borgen, L ;
Grundt, HH ;
Scheen, AC ;
Elven, R .
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, 2004, 82 (04) :521-536
[7]   Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes (vol 103, pg 14959, 2006) [J].
Cannon, Steven B. ;
Sterck, Lieven ;
Rombauts, Stephane ;
Sato, Shusei ;
Cheung, Foo ;
Gouzy, Jerome ;
Wang, Xiaohong ;
Mudge, Joann ;
Vasdewani, Jayprakash ;
Scheix, Thomas ;
Spannagl, Manuel ;
Monaghan, Erin ;
Nicholson, Christine ;
Humphray, Sean J. ;
Schoof, Heiko ;
Mayer, Klaus F. X. ;
Rogers, Jane ;
Quetier, Francis ;
Oldroyd, Giles E. ;
Debelle, Federic ;
Cook, Douglas R. ;
Retzel, Ernest F. ;
Roe, Bruce A. ;
Town, Christopher D. ;
Tabata, Satoshi ;
Van de Peer, Yves ;
Young, Nevin D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (47) :18026-18026
[8]   Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes [J].
Chaw, SM ;
Chang, CC ;
Chen, HL ;
Li, WH .
JOURNAL OF MOLECULAR EVOLUTION, 2004, 58 (04) :424-441
[9]   The advantages and disadvantages of being polyploid [J].
Comai, L .
NATURE REVIEWS GENETICS, 2005, 6 (11) :836-846
[10]   What is the role of genome duplication in the evolution of complexity and diversity? [J].
Crow, KD ;
Wagner, GP .
MOLECULAR BIOLOGY AND EVOLUTION, 2006, 23 (05) :887-892