Classification of Enterobacteriaceae by minimization of stochastic complexity

被引:13
作者
Gyllenberg, HG
Gyllenberg, M
Koski, T
Lund, T
Schindler, J
Verlaan, M
机构
[1] UNIV TURKU,DEPT MATH,TURKU 20014,FINLAND
[2] ROYAL INST TECHNOL,DEPT MATH,S-10044 STOCKHOLM,SWEDEN
[3] CHARLES UNIV,FAC MED 3,DEPT MED MICROBIOL,PRAGUE 10,CZECH REPUBLIC
[4] DELFT UNIV TECHNOL,FAC TECH MATH & INFORMAT,NL-2600 GA DELFT,NETHERLANDS
[5] UNIV HELSINKI,INST BIOTECHNOL,FIN-00014 HELSINKI,FINLAND
来源
MICROBIOLOGY-UK | 1997年 / 143卷
关键词
classification; Enterobacteriaceae; information theory; stochastic complexity; taxonomy;
D O I
10.1099/00221287-143-3-721
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A new method for classifying bacteria is presented and applied to a large set of biochemical data for the Enterobacteriaceae. The method minimizes the bits needed to encode the classes and the items or, equivalently, maximizes the information content of the classification. The resulting taxonomy of Enterobacteriaceae corresponds well to the general structure of earlier classifications. Minimization of stochastic complexity can be considered as a useful tool to create bacterial classifications that are optimal from the point of view of information theory.
引用
收藏
页码:721 / 732
页数:12
相关论文
共 20 条
[1]  
Balows A., 1992, The Prokaryotes
[2]  
Brenner D. J., 1992, PROKARYOTES, V3, P2673
[3]   CONDITIONAL PROBABILITY AND IDENTIFICATION OF BACTERIA - A PILOT STUDY [J].
DYBOWSKI, W ;
FRANKLIN, DA .
JOURNAL OF GENERAL MICROBIOLOGY, 1968, 54 :215-&
[4]   BIOCHEMICAL-IDENTIFICATION OF NEW SPECIES AND BIOGROUPS OF ENTEROBACTERIACEAE ISOLATED FROM CLINICAL SPECIMENS [J].
FARMER, JJ ;
DAVIS, BR ;
HICKMANBRENNER, FW ;
MCWHORTER, A ;
HUNTLEYCARTER, GP ;
ASBURY, MA ;
RIDDLE, C ;
WATHENGRADY, HG ;
ELIAS, C ;
FANNING, GR ;
STEIGERWALT, AG ;
OHARA, CM ;
MORRIS, GK ;
SMITH, PB ;
BRENNER, DJ .
JOURNAL OF CLINICAL MICROBIOLOGY, 1985, 21 (01) :46-76
[5]   MAXIMAL PREDICTIVE CLASSIFICATION [J].
GOWER, JC .
BIOMETRICS, 1974, 30 (04) :643-654
[6]   NONUNIQUENESS IN PROBABILISTIC NUMERICAL IDENTIFICATION OF BACTERIA [J].
GYLLENBERG, M ;
KOSKI, T ;
REILINK, T ;
REILINK, E ;
VERLAAN, M .
JOURNAL OF APPLIED PROBABILITY, 1994, 31 (02) :542-548
[7]   Numerical taxonomy and the principle of maximum entropy [J].
Gyllenberg, M ;
Koski, T .
JOURNAL OF CLASSIFICATION, 1996, 13 (02) :213-229
[8]  
Gyllenberg M., 1993, Binary Computing in Microbiology, V5, P138
[9]  
GYLLENBERG M, 1994, CLASSIFICATION BINAR
[10]  
Krieg N.R., 1984, BERGEYS MANUAL SYSTE