Treatment of electrostatic interactions in computer simulations and calculation of thermodynamic properties such as free energies and pressures

被引:13
作者
Hummer, G [1 ]
Pratt, LR [1 ]
García, AE [1 ]
Neumann, M [1 ]
机构
[1] Univ Calif Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA
来源
SIMULATION AND THEORY OF ELECTROSTATIC INTERACTIONS IN SOLUTION: COMPUTATIONAL CHEMISTRY, BIOPHYSICS, AND AQUEOUS SOLUTIONS | 1999年 / 492卷
关键词
D O I
10.1063/1.1301522
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
We review the treatment of electrostatic interactions in computer simulations under periodic boundary conditions, with emphasis on Ewald summation. Connections between Ewald summation and reaction field approaches will be made within a unifying picture of electrostatic potentials in Wigner lattices. The calculation of thermodynamic pressures in simulations of polar and ionic media will be discussed. Effects of finite system size on charging free energies will be analyzed. In addition, we will briefly review the problem of defining proper thermodynamic limits for single-ion properties. We find that cluster (or droplet) calculations of ionic solvation enthalpies or free energies (e.g., based on quantum mechanical methods) contain a contribution stemming from the charge ordering in; the cluster-vacuum interface. This interfacial potential can lead to deviations of calculated single-ion enthalpies and free energies from the values in a properly defined thermodynamic Limit at infinite ionic dilution. Finally, we will study the validity of linear response approximations for Coulomb systems. The origin of non-linearities in charging free energies will be traced to variations in the microscopic structure. We will conclude with a discussion of accurate integration methods for non-linear free energy expressions.
引用
收藏
页码:84 / 103
页数:20
相关论文
共 103 条
[1]   TAMING THE EWALD SUM IN THE COMPUTER-SIMULATION OF CHARGED SYSTEMS [J].
ADAMS, DJ ;
DUBEY, GS .
JOURNAL OF COMPUTATIONAL PHYSICS, 1987, 72 (01) :156-176
[2]   MOLECULAR-DYNAMICS SIMULATION OF THE ORTHOBARIC DENSITIES AND SURFACE-TENSION OF WATER [J].
ALEJANDRE, J ;
TILDESLEY, DJ ;
CHAPELA, GA .
JOURNAL OF CHEMICAL PHYSICS, 1995, 102 (11) :4574-4583
[3]  
Allen M. P., 1987, Computer Simulation of Liquids
[4]  
[Anonymous], CCP5 INF Q
[5]   On the validity of electrostatic linear response in polar solvents [J].
Aqvist, J ;
Hansson, T .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (22) :9512-9521
[6]   Analysis of electrostatic potential truncation schemes in simulations of polar solvents [J].
Åqvist, J ;
Hansson, T .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (19) :3837-3840
[7]   Cumulant expansion of the free energy: Application to free energy derivatives and component analysis [J].
Archontis, G ;
Karplus, M .
JOURNAL OF CHEMICAL PHYSICS, 1996, 105 (24) :11246-11260
[8]   Hydration and conformational equilibria of simple hydrophobic and amphiphilic solutes [J].
Ashbaugh, HS ;
Kaler, EW ;
Paulaitis, ME .
BIOPHYSICAL JOURNAL, 1998, 75 (02) :755-768
[9]   Reply to comment on "Electrostatic potentials and free energies of solvation of polar and charged molecules" [J].
Ashbaugh, HS ;
Sakane, S ;
Wood, RH .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (19) :3844-3845
[10]   Effects of long-range electrostatic potential truncation on the free energy of ionic hydration [J].
Ashbaugh, HS ;
Wood, RH .
JOURNAL OF CHEMICAL PHYSICS, 1997, 106 (19) :8135-8139