Compactness of human housekeeping genes: selection for economy or genomic design?

被引:129
作者
Vinogradov, AE [1 ]
机构
[1] Russian Acad Sci, Inst Cytol, St Petersburg 194064, Russia
基金
俄罗斯基础研究基金会;
关键词
D O I
10.1016/j.tig.2004.03.006
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The short length of human housekeeping genes, compared with tissue-specific genes, has been attributed to selection for economy in transcription and translation. In this article, I show that the non-transcribed intergenic spacer around housekeeping genes is also short, which suggests that short housekeeping genes are a result of local genome organization. Tissue-specific genes are longer than housekeeping genes because they have more functional domains, which is an indication of their more-complex protein architecture.
引用
收藏
页码:248 / 253
页数:6
相关论文
共 41 条
[1]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkr1065, 10.1093/nar/gkh121]
[2]   Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome [J].
Baugh, LR ;
Hill, AA ;
Slonim, DK ;
Brown, EL ;
Hunter, CP .
DEVELOPMENT, 2003, 130 (05) :889-900
[3]   Isochores and the evolutionary genomics of vertebrates [J].
Bernardi, G .
GENE, 2000, 241 (01) :3-17
[4]   Selection for short introns in highly expressed genes [J].
Castillo-Davis, CI ;
Mekhedov, SL ;
Hartl, DL ;
Koonin, EV ;
Kondrashov, FA .
NATURE GENETICS, 2002, 31 (04) :415-418
[5]  
Cavalier-Smith T., 1985, P105
[6]   Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes [J].
Denisov, DA ;
Shpigelman, ES ;
Trifonov, EN .
GENE, 1997, 205 (1-2) :145-149
[7]   Intron-exon structures of eukaryotic model organisms [J].
Deutsch, M ;
Long, M .
NUCLEIC ACIDS RESEARCH, 1999, 27 (15) :3219-3228
[8]   SELFISH GENES, THE PHENOTYPE PARADIGM AND GENOME EVOLUTION [J].
DOOLITTLE, WF ;
SAPIENZA, C .
NATURE, 1980, 284 (5757) :601-603
[9]   STATISTICAL-ANALYSIS OF VERTEBRATE SEQUENCES REVEALS THAT LONG GENES ARE SCARCE IN GC-RICH ISOCHORES [J].
DURET, L ;
MOUCHIROUD, D ;
GAUTIER, C .
JOURNAL OF MOLECULAR EVOLUTION, 1995, 40 (03) :308-317
[10]   Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, Arabidopsis [J].
Duret, L ;
Mouchiroud, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (08) :4482-4487