Towards many colors in FISH on 3D-preserved interphase nuclei

被引:38
作者
Walter, J.
Joffe, B.
Bolzer, A.
Albiez, H.
Benecletti, P. A.
Mueller, S.
Speicher, M. R.
Cremer, T.
Cremer, M.
Solovei, I.
机构
[1] Univ Munich, Biozentrum, Dept Biol 2, Chair Anthropol & Human Genet, DE-82152 Martinsried, Germany
[2] Univ Munich, BioImaging Zentrum, TILL ID GmbH, DE-82152 Martinsried, Germany
[3] CNR, IPCF, I-56100 Pisa, Italy
[4] Tech Univ Munich, D-8000 Munich, Germany
[5] GSF Munich, Inst Human Genet, Munich, Germany
关键词
D O I
10.1159/000094227
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The article reviews the existing methods of multicolor FISH on nuclear targets, first of all, interphase chromosomes. FISH proper and image acquisition are considered as two related components of a single process. We discuss (1) M-FISH (combinatorial labeling + deconvolution + widefield microscopy); (2) multicolor labeling + SIM (structured illumination microscopy); (3) the standard approach to multicolor FISH + CLSM (confocal laser scanning microscopy; one fluorochrome - one color channel); (4) combinatorial labeling + CLSM; (5) non-combinatorial labeling + CLSM + linear unmixing. Two related issues, deconvolution of images acquired with CLSM and correction of data for chromatic Z-shift, are also discussed. All methods are illustrated with practical examples. Finally, several rules of thumb helping to choose an optimal labeling + microscopy combination for the planned experiment are suggested. Copyright (c) 2006 S. Karger AG, Basel.
引用
收藏
页码:367 / 378
页数:12
相关论文
共 31 条
[1]   An optimized probe set for the detection of small interchromosomal aberrations by use of 24-color FISH [J].
Azofeifa, J ;
Fauth, C ;
Kraus, J ;
Maierhofer, C ;
Langer, S ;
Bolzer, A ;
Reichman, J ;
Schuffenhauer, S ;
Speicher, MR .
AMERICAN JOURNAL OF HUMAN GENETICS, 2000, 66 (05) :1684-1688
[2]  
BENEDETTI PA, 2000, Patent No. 6016367
[3]   Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes [J].
Bolzer, A ;
Kreth, G ;
Solovei, I ;
Koehler, D ;
Saracoglu, K ;
Fauth, C ;
Müller, S ;
Eils, R ;
Cremer, C ;
Speicher, MR ;
Cremer, T .
PLOS BIOLOGY, 2005, 3 (05) :826-842
[4]  
BRIDGER JM, 1999, PRACT APPROACH SER, V200, P103
[5]   High resolution multicolor-banding:: a new technique for refined FISH analysis of human chromosomes [J].
Chudoba, I ;
Plesch, A ;
Lörch, T ;
Lemke, J ;
Claussen, U ;
Senger, G .
CYTOGENETICS AND CELL GENETICS, 1999, 84 (3-4) :156-160
[6]   Optical sectioning microscopy [J].
Conchello, JA ;
Lichtman, JW .
NATURE METHODS, 2005, 2 (12) :920-931
[7]   Image restoration for confocal microscopy: Improving the limits of deconvolution, with application to the visualization of the mammalian hearing organ [J].
de Monvel, JB ;
Le Calvez, S ;
Ulfendahl, M .
BIOPHYSICAL JOURNAL, 2001, 80 (05) :2455-2470
[8]   An optimized, fully automated system for fast and accurate identification of chromosomal rearrangements by multiplex-FISH (M-FISH) [J].
Eils, R ;
Uhrig, S ;
Saracoglu, K ;
Sätzler, K ;
Bolzer, A ;
Petersen, I ;
Chassery, JM ;
Ganser, M ;
Speicher, MR .
CYTOGENETICS AND CELL GENETICS, 1998, 82 (3-4) :160-171
[9]   Classifying by colors: FISH-based genome analysis [J].
Fauth, C ;
Speicher, MR .
CYTOGENETICS AND CELL GENETICS, 2001, 93 (1-2) :1-10
[10]   The genome and the nucleus: a marriage made by evolution - Genome organisation and nuclear architecture [J].
Foster, HA ;
Bridger, JM .
CHROMOSOMA, 2005, 114 (04) :212-229