Metagenomics, gene discovery and the ideal biocatalyst

被引:15
作者
Cowan, DA [1 ]
Arslanoglu, A [1 ]
Burton, SG [1 ]
Baker, GC [1 ]
Cameron, RA [1 ]
Smith, JJ [1 ]
Meyer, Q [1 ]
机构
[1] Univ Western Cape, Adv Res Ctr Appl Microbiol, Dept Biotechnol, ZA-7535 Cape Town, South Africa
关键词
biocatalyst; gene discovery; hyperthermophile; metagenome; sequence space; unculturable;
D O I
10.1042/BST0320298
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
With the rapid development of powerful protein evolution and enzyme-screening technologies, there is a growing belief that optimum conditions for biotransformation processes can be established without the constraints of the properties of the biocatalyst. These technologies can then be applied to find the 'ideal biocatalyst' for the process. in identifying the ideal biocatalyst, the processes of gene discovery and enzyme evolution play major roles. However, in order to expand the pool genes for in vitro evolution, new technologies, which circumvent the limitations of microbial culturability, must be applied. These technologies, which currently include metagenomic library screening, gene-specific amplification methods and even full metagenomic sequencing, provide access to a volume of 'sequence space' that is not addressed by traditional screening.
引用
收藏
页码:298 / 302
页数:5
相关论文
共 22 条
  • [1] PHYLOGENETIC IDENTIFICATION AND IN-SITU DETECTION OF INDIVIDUAL MICROBIAL-CELLS WITHOUT CULTIVATION
    AMANN, RI
    LUDWIG, W
    SCHLEIFER, KH
    [J]. MICROBIOLOGICAL REVIEWS, 1995, 59 (01) : 143 - 169
  • [2] Exploring protein sequence space using knowledge-based potentials
    Babajide, A
    Farber, R
    Hofacker, IL
    Inman, J
    Lapedes, AS
    Stadler, PF
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2001, 212 (01) : 35 - 46
  • [3] Prospecting for novel lipase genes using PCR
    Bell, PJL
    Sunna, A
    Gibbs, MD
    Curach, NC
    Nevalainen, H
    Bergquist, PL
    [J]. MICROBIOLOGY-SGM, 2002, 148 : 2283 - 2291
  • [4] Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed environmental DNA
    Brady, SF
    Clardy, J
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (51) : 12903 - 12904
  • [5] BULL AT, 1992, ANNU REV MICROBIOL, V46, P219, DOI 10.1146/annurev.micro.46.1.219
  • [6] Cottrell MT, 1999, APPL ENVIRON MICROB, V65, P2553
  • [7] Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia
    Entcheva, P
    Liebl, W
    Johann, A
    Hartsch, T
    Streit, WR
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (01) : 89 - 99
  • [8] Henne A, 1999, APPL ENVIRON MICROB, V65, P3901
  • [9] Methods for assessing the composition and diversity of soil microbial communities
    Hill, GT
    Mitkowski, NA
    Aldrich-Wolfe, L
    Emele, LR
    Jurkonie, DD
    Ficke, A
    Maldonado-Ramirez, S
    Lynch, ST
    Nelson, EB
    [J]. APPLIED SOIL ECOLOGY, 2000, 15 (01) : 25 - 36
  • [10] General method for sequence-independent site-directed chimeragenesis
    Hiraga, K
    Arnold, FH
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2003, 330 (02) : 287 - 296