Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis

被引:225
作者
Zengini, Eleni [1 ,2 ]
Hatzikotoulas, Konstantinos [3 ]
Tachmazidou, Ioanna [3 ,4 ]
Steinberg, Julia [3 ,5 ]
Hartwig, Fernando P. [6 ,7 ]
Southam, Lorraine [3 ,8 ]
Hackinger, Sophie [3 ]
Boer, Cindy G. [9 ,10 ]
Styrkarsdottir, Unnur [11 ]
Gilly, Arthur [3 ]
Suveges, Daniel [3 ]
Killian, Britt [3 ]
Ingvarsson, Thorvaldur [12 ,13 ,14 ]
Jonsson, Helgi [13 ,15 ]
Babis, George C. [16 ]
McCaskie, Andrew [17 ]
Uitterlinden, Andre G. [9 ,10 ]
van Meurs, Joyce B. J. [9 ,10 ]
Thorsteinsdottir, Unnur [11 ,13 ]
Stefansson, Kari [11 ,13 ]
Smith, George Davey [18 ,19 ,20 ]
Wilkinson, Jeremy M. [1 ]
Zeggini, Eleftheria [3 ]
机构
[1] Univ Sheffield, Dept Oncol & Metab, Sheffield, S Yorkshire, England
[2] Dromokaiteio Psychiat Hosp, Psychiat Dept 5, Athens, Greece
[3] Wellcome Trust Sanger Inst, Human Genet, Hinxton, England
[4] Med Res Ctr, GSK, R&D Target Sci, Stevenage, Herts, England
[5] Canc Council NSW, Canc Res Div, Sydney, NSW, Australia
[6] Univ Fed Pelotas, Postgrad Program Epidemiol, Pelotas, Brazil
[7] Univ Bristol, MRC, Integrat Epidemiol Unit, Bristol, Avon, England
[8] Univ Oxford, Wellcome Trust Ctr Human Genet, Oxford, England
[9] Erasmus MC, Dept Internal Med, Rotterdam, Netherlands
[10] Erasmus MC, Dept Epidemiol, Rotterdam, Netherlands
[11] DeCODE Genet Amgen, Reykjavik, Iceland
[12] Akureyri Hosp, Dept Orthopaed Surg, Akureyri, Iceland
[13] Univ Iceland, Fac Med, Reykjavik, Iceland
[14] Univ Akureyri, Inst Hlth Sci, Akureyri, Iceland
[15] Natl Univ Hosp Iceland, Landspitali, Dept Med, Reykjavik, Iceland
[16] Natl & Kapodistrian Univ Athens, Konstantopouleio Gen Hosp, Dept Orthopaed Surg 2, Athens, Greece
[17] Univ Cambridge, Addenbrookes Hosp, Dept Surg, Div Trauma & Orthopaed Surg, Cambridge, England
[18] Univ Bristol, Populat Hlth Sci, Bristol, Avon, England
[19] Univ Hosp Bristol, NHS Fdn Trust, Bristol Biomed Res Ctr, Natl Inst Hlth Res, Bristol, Avon, England
[20] Univ Bristol, Bristol, Avon, England
基金
英国惠康基金;
关键词
TRANSFORMING-GROWTH-FACTOR; CARTILAGE; MICE; BONE; P38; GDF5; RISK; CHONDROCYTES; ASSOCIATION; EXPRESSION;
D O I
10.1038/s41588-018-0079-y
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Osteoarthritis is a common complex disease imposing a large public-health burden. Here, we performed a genome-wide association study for osteoarthritis, using data across 16.5 million variants from the UK Biobank resource. After performing replication and meta-analysis in up to 30,727 cases and 297,191 controls, we identified nine new osteoarthritis loci, in all of which the most likely causal variant was noncoding. For three loci, we detected association with biologically relevant radiographic endophenotypes, and in five signals we identified genes that were differentially expressed in degraded compared with intact articular cartilage from patients with osteoarthritis. We established causal effects on osteoarthritis for higher body mass index but not for triglyceride levels or genetic predisposition to type 2 diabetes.
引用
收藏
页码:549 / +
页数:13
相关论文
共 58 条
[1]   A global reference for human genetic variation [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Wang, Jun ;
Wilson, Richard K. ;
Boerwinkle, Eric ;
Doddapaneni, Harsha ;
Han, Yi ;
Korchina, Viktoriya ;
Kovar, Christie ;
Lee, Sandra ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Zhu, Yiming ;
Chang, Yuqi ;
Feng, Qiang ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Lan, Tianming ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Liu, Shengmao ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Tang, Meifang ;
Wang, Bo .
NATURE, 2015, 526 (7571) :68-+
[2]  
[Anonymous], 2016, bioRxiv, DOI [10.1101/078972, DOI 10.1101/078972]
[3]   Transforming growth factor a suppression of articular chondrocyte phenotype and Sox9 expression in a rat model of osteoarthritis [J].
Appleton, C. Thomas G. ;
Usmani, Shirine E. ;
Bernier, Suzanne M. ;
Aigner, Thomas ;
Beier, Frank .
ARTHRITIS AND RHEUMATISM, 2007, 56 (11) :3693-3705
[4]   Rho/ROCK and MEK/ERK activation by transforming growth factor-α induces articular cartilage degradation [J].
Appleton, C. Thomas G. ;
Usmani, Shirine E. ;
Mort, John S. ;
Beier, Frank .
LABORATORY INVESTIGATION, 2010, 90 (01) :20-30
[5]   Self-reported knee pain and disability among healthy individuals: reference data and factors associated with the Knee injury and Osteoarthritis Outcome Score (KOOS) and KOOS-Child [J].
Baldwin, J. N. ;
McKay, M. J. ;
Simic, M. ;
Hiller, C. E. ;
Moloney, N. ;
Nightingale, E. J. ;
Burns, J. .
OSTEOARTHRITIS AND CARTILAGE, 2017, 25 (08) :1282-1290
[6]   Genome-wide analysis identifies 12 loci influencing human reproductive behavior [J].
Barban, Nicola ;
Jansen, Rick ;
de Vlaming, Ronald ;
Vaez, Ahmad ;
Mandemakers, Jornt J. ;
Tropf, Felix C. ;
Shen, Xia ;
Wilson, James F. ;
Chasman, Daniel I. ;
Nolte, Illa M. ;
Tragante, Vinicius ;
van der Laan, Sander W. ;
Perry, John R. B. ;
Kong, Augustine ;
Ahluwalia, Tarunveer S. ;
Albrecht, Eva ;
Yerges-Armstrong, Laura ;
Atzmon, Gil ;
Auro, Kirsi ;
Ayers, Kristin ;
Bakshi, Andrew ;
Ben-Avraham, Danny ;
Berger, Klaus ;
Bergman, Aviv ;
Bertram, Lars ;
Bielak, Lawrence F. ;
Bjornsdottir, Gyda ;
Bonder, Marc Jan ;
Broer, Linda ;
Bui, Minh ;
Barbieri, Caterina ;
Cavadino, Alana ;
Chavarro, Jorge E. ;
Turman, Constance ;
Concas, Maria Pina ;
Cordell, Heather J. ;
Davies, Gail ;
Eibich, Peter ;
Eriksson, Nicholas ;
Esko, Tonu ;
Eriksson, Joel ;
Falahi, Fahimeh ;
Felix, Janine F. ;
Fontana, Mark Alan ;
Franke, Lude ;
Gandin, Ilaria ;
Gaskins, Audrey J. ;
Gieger, Christian ;
Gunderson, Erica P. ;
Guo, Xiuqing .
NATURE GENETICS, 2016, 48 (12) :1462-1472
[7]   Mitogen-activated protein kinase phosphatase-1: function and regulation in bone and related tissues [J].
Broome, David T. ;
Datta, Nabanita S. .
CONNECTIVE TISSUE RESEARCH, 2016, 57 (03) :175-189
[8]   Associations of educational attainment, occupation and community poverty with knee osteoarthritis in the Johnston County (North Carolina) osteoarthritis project [J].
Callahan, Leigh F. ;
Cleveland, Rebecca J. ;
Shreffler, Jack ;
Schwartz, Todd A. ;
Schoster, Britta ;
Randolph, Randy ;
Renner, Jordan B. ;
Jordan, Joanne M. .
ARTHRITIS RESEARCH & THERAPY, 2011, 13 (05)
[9]   Ancient selection for derived alleles at a GDF5 enhancer influencing human growth and osteoarthritis risk [J].
Capellini, Terence D. ;
Chen, Hao ;
Cao, Jiaxue ;
Doxey, Andrew C. ;
Kiapour, Ata M. ;
Schoor, Michael ;
Kingsley, David M. .
NATURE GENETICS, 2017, 49 (08) :1202-+
[10]   Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis [J].
Castano-Betancourt, Martha C. ;
Evans, Dan S. ;
Ramos, Yolande F. M. ;
Boer, Cindy G. ;
Metrustry, Sarah ;
Liu, Youfang ;
den Hollander, Wouter ;
van Rooij, Jeroen ;
Kraus, Virginia B. ;
Yau, Michelle S. ;
Mitchell, Braxton D. ;
Muir, Kenneth ;
Hofman, Albert ;
Doherty, Michael ;
Doherty, Sally ;
Zhang, Weiya ;
Kraaij, Robert ;
Rivadeneira, Fernando ;
Barrett-Connor, Elizabeth ;
Maciewicz, Rose A. ;
Arden, Nigel ;
Nelissen, Rob G. H. H. ;
Kloppenburg, Margreet ;
Jordan, Joanne M. ;
Nevitt, Michael C. ;
Slagboom, Eline P. ;
Hart, Deborah J. ;
Lafeber, Floris ;
Styrkarsdottir, Unnur ;
Zeggini, Eleftheria ;
Evangelou, Evangelos ;
Spector, Tim D. ;
Uitterlinden, Andre G. ;
Lane, Nancy E. ;
Meulenbelt, Ingrid ;
Valdes, Ana M. ;
van Meurs, Joyce B. J. .
PLOS GENETICS, 2016, 12 (10)