Binding mode of benzhydroxamic acid to Arthromyces ramosus peroxidase shows by X-ray crystallographic analysis of the complex at 1.6 angstrom resolution

被引:65
作者
Itakura, H [1 ]
Oda, Y [1 ]
Fukuyama, K [1 ]
机构
[1] OSAKA UNIV,GRAD SCH SCI,DEPT BIOL,TOYONAKA,OSAKA 560,JAPAN
关键词
peroxidase; heme enzyme; benzhydroxamic acid; X-ray crystallography; Arthromyces ramosus;
D O I
10.1016/S0014-5793(97)00751-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of Arthromyces ramosus peroxidase (ARP) in complex with benzhydroxamic acid (BHA) its determined by X-ray analysis at 1.6 Angstrom shows unambiguously how BHA binds to ARP, BHA is located in the distal heme pocket. Its functional groups are held by three hydrogen bonds to His(56)N(epsilon), Arg(52)N(epsilon), and Pro(154)O, but are too far away to interact with the heme iron, The aromatic ring of BHA is positioned at the entrance of the channel to the heme pocket, approximately parallel to the heme group, Most water molecules at the active site of the native enzyme are replaced by BHA, leaving a ligand, probably a water molecule, at the sixth position of the heme, Results are compared with spectroscopic data. (C) 1997 Federation of European Biochemical Societies.
引用
收藏
页码:107 / 110
页数:4
相关论文
共 31 条
[1]  
BRUNGER AT, 1992, XPLOR VERSION 3 0
[2]   2.3 angstrom resolution X-ray crystal structure of the bisubstrate analogue inhibitor salicylhydroxamic acid bound to human myeloperoxidase: A model for a prereaction complex with hydrogen peroxide [J].
Davey, CA ;
Fenna, RE .
BIOCHEMISTRY, 1996, 35 (33) :10967-10973
[3]  
EVERSE J, 1991, PEROXIDASES CHEM BIO, V1
[4]  
Everse J., 1991, PEROXIDASES CHEM BIO, V2
[5]  
FINZEL BC, 1984, J BIOL CHEM, V259, P3027
[6]   Binding of iodide to Arthromyces ramosus peroxidase investigated with X-ray crystallographic analysis, H-1 and I-127 NMR spectroscopy, and steady-state kinetics [J].
Fukuyama, K ;
Sato, K ;
Itakura, H ;
Takahashi, S ;
Hosoya, T .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (09) :5752-5756
[7]   Probing the aromatic-donor-binding site of horseradish peroxidase using site-directed mutagenesis and the suicide substrate phenylhydrazine [J].
Gilfoyle, DJ ;
RodriguezLopez, JN ;
Smith, AT .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1996, 236 (02) :714-722
[8]   Mutation of distal residues of horseradish peroxidase: Influence on substrate binding and cavity properties [J].
Howes, BD ;
RodriguezLopez, JN ;
Smith, AT ;
Smulevich, G .
BIOCHEMISTRY, 1997, 36 (06) :1532-1543
[9]   CRYSTALLIZATION AND PRELIMINARY-X-RAY DIFFRACTION STUDIES OF PEROXIDASE FROM A FUNGUS ARTHROMYCES-RAMOSUS [J].
KUNISHIMA, N ;
FUKUYAMA, K ;
WAKABAYASHI, S ;
SUMIDA, M ;
TAKAYA, M ;
SHIBANO, Y ;
AMACHI, T ;
MATSUBARA, H .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1993, 15 (02) :216-220
[10]   Pentacoordination of the heme iron of Arthromyces ramosus peroxidase shown by a 1.8 angstrom resolution crystallographic study at pH 4.5 [J].
Kunishima, N ;
Amada, F ;
Fukuyama, K ;
Kawamoto, M ;
Matsunaga, T ;
Matsubara, H .
FEBS LETTERS, 1996, 378 (03) :291-294