Parametrized model for aqueous free energies of solvation using geometry-dependent atomic surface tensions with implicit electrostatics

被引:78
作者
Hawkins, GD
Cramer, CJ
Truhlar, DG
机构
[1] UNIV MINNESOTA, DEPT CHEM, MINNEAPOLIS, MN 55455 USA
[2] UNIV MINNESOTA, INST SUPERCOMP, MINNEAPOLIS, MN 55455 USA
关键词
D O I
10.1021/jp971035x
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a new model for predicting aqueous free energies of solvation based entirely on geometry-dependent atomic surface tensions. The model is especially suited for rapid estimations on large molecules or large sets of molecules. This method is designed to be employed with gas-phase geometries to obtain solvation free energies of organic molecules containing H, C, N, O, F, S, Cl, and Br. We parametrized the model by using a training set containing 235 neutral solutes with a variety of functional groups, and we achieve a mean unsigned error of 0.55 kcal/mol when the model is applied using gas-phase geometries calculated at the Hartree-Fock level with a heteroatom-polarized valence-double-zeta basis set (HF/MIDI!) and a mean unsigned error of 0.57 kcal/mol when it is applied using gas-phase geometries from Austin Model 1 (AM1). For a smaller set of 99 solutes, we compared the new model to two previously published models based on atomic solvation parameters, and we achieve a mean unsigned error of 0.56 kcal/mol as compared to 1.87 and 2.13 kcal/mol for the previous models. A simple extension is provided to allow treatment of certain kinds of charged groups. The model is expected to be especially useful for problems requiring high efficiency because of the size of the system, e.g., protein folding, or problems requiring rapid estimations because of the large number of calculations required, e.g., scoring of combinatorial libraries.
引用
收藏
页码:7147 / 7157
页数:11
相关论文
共 62 条
  • [1] THERMODYNAMICS OF SOLUTE TRANSFER FROM WATER TO HEXADECANE
    ABRAHAM, MH
    WHITING, GS
    FUCHS, R
    CHAMBERS, EJ
    [J]. JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1990, (02): : 291 - 300
  • [2] THE DEFINITION OF ELECTRONEGATIVITY AND THE CHEMISTRY OF THE NOBLE-GASES
    ALLEN, LC
    HUHEEY, JE
    [J]. JOURNAL OF INORGANIC & NUCLEAR CHEMISTRY, 1980, 42 (10): : 1523 - 1524
  • [3] ELECTRONEGATIVITY VALUES FROM THERMOCHEMICAL DATA
    ALLRED, AL
    [J]. JOURNAL OF INORGANIC & NUCLEAR CHEMISTRY, 1961, 17 (3-4): : 215 - 221
  • [4] BENNAIM A, 1992, STAT THERMODYNAMICS, P421
  • [5] VAN DER WAALS VOLUMES + RADII
    BONDI, A
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1964, 68 (03) : 441 - +
  • [6] GROUP CONTRIBUTIONS TO THE THERMODYNAMIC PROPERTIES OF NON-IONIC ORGANIC SOLUTES IN DILUTE AQUEOUS-SOLUTION
    CABANI, S
    GIANNI, P
    MOLLICA, V
    LEPORI, L
    [J]. JOURNAL OF SOLUTION CHEMISTRY, 1981, 10 (08) : 563 - 595
  • [7] Chemical laser modeling with genetic algorithms
    Carroll, DL
    [J]. AIAA JOURNAL, 1996, 34 (02) : 338 - 346
  • [8] Model for aqueous solvation based on class IV atomic charges and first solvation shell effects
    Chambers, CC
    Hawkins, GD
    Cramer, CJ
    Truhlar, DG
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (40) : 16385 - 16398
  • [9] HYDROPHOBIC BONDING AND ACCESSIBLE SURFACE-AREA IN PROTEINS
    CHOTHIA, C
    [J]. NATURE, 1974, 248 (5446) : 338 - 339
  • [10] PM3-SM3 - A GENERAL PARAMETERIZATION FOR INCLUDING AQUEOUS SOLVATION EFFECTS IN THE PM3 MOLECULAR-ORBITAL MODEL
    CRAMER, CJ
    TRUHLAR, DG
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 1992, 13 (09) : 1089 - 1097