Solution structure and dynamics of the DNA-binding domain of the adipocyte-transcription factor FREAC-11

被引:51
作者
van Dongen, MJP
Cederberg, A
Carlsson, P
Enerbäck, S
Wikström, M
机构
[1] Pharmacia & Upjohn, Dept Struct Chem, S-11287 Stockholm, Sweden
[2] Gothenburg Univ, Dept Mol Biol, Lundberg Lab, S-41390 Gothenburg, Sweden
关键词
FREAC; forkhead; winged helix; NMR structure; dynamics;
D O I
10.1006/jmbi.1999.3476
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Transcription factors of the forkhead type share a highly conserved DNA-binding domain of about 100 amino acid residues. FREAC-11, expressed in adipocytes, belongs to this class. Here, we report on NMR studies that established the three-dimensional structure of the FREAC-11, DNA-binding domain. Although apparent similarities to the structures of other members within the forkhead family are observed, the structure also reveals some remarkable differences. Along with the complementary dynamics, the data provide insight into the fundamentals of sequence specificity within a highly conserved motif. (C) 2000 Academic Press.
引用
收藏
页码:351 / 359
页数:9
相关论文
共 31 条
[1]   SOLUTION STRUCTURE OF (CD2+)(1)-CALBINDIN D-9K REVEALS DETAILS OF THE STEPWISE STRUCTURAL-CHANGES ALONG THE APO-](CA2+)(1)(II)-](CA2+)(2)(I,II) BINDING PATHWAY [J].
AKKE, M ;
FORSEN, S ;
CHAZIN, WJ .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 252 (01) :102-121
[2]   Different DNA contact schemes are used by two winged helix proteins to recognize a DNA binding sequence [J].
Bravieri, R ;
Shiyanova, T ;
Chen, TH ;
Liao, XB .
NUCLEIC ACIDS RESEARCH, 1997, 25 (14) :2888-2896
[3]  
BRUNGER AT, 1992, X PLOR MANUAL VERSIO
[4]   CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF RESEMBLES HISTONE-H5 [J].
CLARK, KL ;
HALAY, ED ;
LAI, ES ;
BURLEY, SK .
NATURE, 1993, 364 (6436) :412-420
[5]   MULTIPLE HEPATOCYTE-ENRICHED NUCLEAR FACTORS FUNCTION IN THE REGULATION OF TRANSTHYRETIN AND ALPHA-1-ANTITRYPSIN GENES [J].
COSTA, RH ;
GRAYSON, DR ;
DARNELL, JE .
MOLECULAR AND CELLULAR BIOLOGY, 1989, 9 (04) :1415-1425
[6]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293
[7]   CHARACTERIZATION OF THE HUMAN LIPOPROTEIN-LIPASE (LPL) PROMOTER - EVIDENCE OF 2 CIS-REGULATORY REGIONS, LP-ALPHA AND LP-BETA, OF IMPORTANCE FOR THE DIFFERENTIATION-LINKED INDUCTION OF THE LPL GENE DURING ADIPOGENESIS [J].
ENERBACK, S ;
OHLSSON, BG ;
SAMUELSSON, L ;
BJURSELL, G .
MOLECULAR AND CELLULAR BIOLOGY, 1992, 12 (10) :4622-4633
[8]   BACKBONE DYNAMICS OF A FREE AND A PHOSPHOPEPTIDE-COMPLEXED SRC HOMOLOGY-2 DOMAIN STUDIED BY N-15 NMR RELAXATION [J].
FARROW, NA ;
MUHANDIRAM, R ;
SINGER, AU ;
PASCAL, SM ;
KAY, CM ;
GISH, G ;
SHOELSON, SE ;
PAWSON, T ;
FORMANKAY, JD ;
KAY, LE .
BIOCHEMISTRY, 1994, 33 (19) :5984-6003
[9]   Determination of phi and chi(1) angles in proteins from C-13-C-13 three-bond J couplings measured by three-dimensional heteronuclear NMR. How planar is the peptide bond? [J].
Hu, JS ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (27) :6360-6368
[10]   Dynamic DNA contacts observed in the NMR structure of winged helix protein-DNA complex [J].
Jin, CW ;
Marsden, I ;
Chen, XQ ;
Liao, XB .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 289 (04) :683-690