Finding genes by computer: The state of the art

被引:101
作者
Fickett, JW
机构
[1] Bioinformatics Group, Mail Code UW 2230, SmithKline Beecham Pharhaceltjcals, King of Prussia, PA 19406
关键词
D O I
10.1016/0168-9525(96)10038-X
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Discovering new genes, and their functions, can be aided not only by special purpose gene (and coding region) finding software, but also by searches in key databases, and by programs for finding particular sites relevant to gene expression, such as promoters and splice sites. No one software package includes all the necessary tools. I describe here the main kinds of tools; their working principles, strengths and limitations; and how combined evidence from multiple tools can aid in optimum gene identification.
引用
收藏
页码:316 / 320
页数:5
相关论文
共 33 条
  • [1] QUANTITATIVE-ANALYSIS OF RIBOSOME BINDING-SITES IN ESCHERICHIA-COLI
    BARRICK, D
    VILLANUEBA, K
    CHILDS, J
    KALIL, R
    SCHNEIDER, TD
    LAWRENCE, CE
    GOLD, L
    STORMO, GD
    [J]. NUCLEIC ACIDS RESEARCH, 1994, 22 (07) : 1287 - 1295
  • [2] GENE DISCOVERY IN DBEST
    BOGUSKI, MS
    TOLSTOSHEV, CM
    BASSETT, DE
    [J]. SCIENCE, 1994, 265 (5181) : 1993 - 1994
  • [3] GENMARK - PARALLEL GENE RECOGNITION FOR BOTH DNA STRANDS
    BORODOVSKY, M
    MCININCH, J
    [J]. COMPUTERS & CHEMISTRY, 1993, 17 (02): : 123 - 133
  • [4] CONSTRUCTION OF A TRANSCRIPTION MAP SURROUNDING THE BRCA1 LOCUS OF HUMAN-CHROMOSOME-17
    BRODY, LC
    ABEL, KJ
    CASTILLA, LH
    COUCH, FJ
    MCKINLEY, DR
    YIN, GY
    HO, PP
    MERAJVER, S
    CHANDRASEKHARAPPA, SC
    XU, JZ
    COLE, JL
    STRUEWING, JP
    VALDES, JM
    COLLINS, FS
    WEBER, BL
    [J]. GENOMICS, 1995, 25 (01) : 238 - 247
  • [5] PREDICTION OF HUMAN MESSENGER-RNA DONOR AND ACCEPTOR SITES FROM THE DNA-SEQUENCE
    BRUNAK, S
    ENGELBRECHT, J
    KNUDSEN, S
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1991, 220 (01) : 49 - 65
  • [6] WEIGHT MATRIX DESCRIPTIONS OF 4 EUKARYOTIC RNA POLYMERASE-II PROMOTER ELEMENTS DERIVED FROM 502 UNRELATED PROMOTER SEQUENCES
    BUCHER, P
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 212 (04) : 563 - 578
  • [7] BURSET M, IN PRESS GENOMICS
  • [8] CHALLENGING TIMES FOR BIOINFORMATICS
    CASARI, G
    ANDRADE, MA
    BORK, P
    BOYLE, J
    DARUVAR, A
    OUZOUNIS, C
    SCHNEIDER, R
    TAMAMES, J
    VALENCIA, A
    SANDER, C
    [J]. NATURE, 1995, 376 (6542) : 647 - 648
  • [9] CASKEY C, 1995, GENOME DIGEST, V2, P6
  • [10] ISOLATION OF GENES FROM COMPLEX SOURCES OF MAMMALIAN GENOMIC DNA USING EXON AMPLIFICATION
    CHURCH, DM
    STOTLER, CJ
    RUTTER, JL
    MURRELL, JR
    TROFATTER, JA
    BUCKLER, AJ
    [J]. NATURE GENETICS, 1994, 6 (01) : 98 - 105