Minimum reporting requirements for proteomics: A MIAPE primer

被引:36
作者
Taylor, Chris E. [1 ]
机构
[1] European Bioinformat Inst, Hinxton CB10 1S, Cambs, England
关键词
D O I
10.1002/pmic.200600549
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Amongst other functions, the Human Proteome Organization's Proteomics Standards Initiative (HUPO PSI) facilitates the generation by the proteomics community of guidelines that specify the appropriate level of detail to provide when,describing the various components of a proteomics experiment. These guidelines are codified the MIAPE (Minimum Information About a Proteomics Experiment) specification, the first modules of which are now finalized. This primer describes the structure and scope of MIAPE, places it in context amongst reporting specifications for other domains, briefly discusses related informatics, resources and closes by considering the ramifications for the proteomics community.
引用
收藏
页码:39 / 44
页数:6
相关论文
共 18 条
[1]  
[Anonymous], 2002, Nature, V419, P323
[2]   An open letter to the scientific journals [J].
Ball, CA ;
Sherlock, G ;
Parkinson, H ;
Rocca-Sera, P ;
Brooksbank, C ;
Causton, HC ;
Cavalieri, D ;
Gaasterland, T ;
Hingamp, P ;
Holstege, F ;
Ringwald, M ;
Spellman, P ;
Stoeckert, CJ ;
Stewart, JE ;
Taylor, R ;
Brazma, A ;
Quackenbush, J .
BIOINFORMATICS, 2002, 18 (11) :1409-1409
[3]   Minimum information about a microarray experiment (MIAME) - toward standards for microarray data [J].
Brazma, A ;
Hingamp, P ;
Quackenbush, J ;
Sherlock, G ;
Spellman, P ;
Stoeckert, C ;
Aach, J ;
Ansorge, W ;
Ball, CA ;
Causton, HC ;
Gaasterland, T ;
Glenisson, P ;
Holstege, FCP ;
Kim, IF ;
Markowitz, V ;
Matese, JC ;
Parkinson, H ;
Robinson, A ;
Sarkans, U ;
Schulze-Kremer, S ;
Stewart, J ;
Taylor, R ;
Vilo, J ;
Vingron, M .
NATURE GENETICS, 2001, 29 (04) :365-371
[4]  
FIEHN O, 2006, IN PRESS OMICS
[5]   PEDRo: A database for storing, searching and disseminating experimental proteomics data [J].
Garwood, K ;
McLaughlin, T ;
Garwood, C ;
Joens, S ;
Morrison, N ;
Taylor, CF ;
Carroll, K ;
Evans, C ;
Whetton, AD ;
Hart, S ;
Stead, D ;
Yin, Z ;
Brown, AJP ;
Hesketh, A ;
Chater, K ;
Hansson, L ;
Mewissen, M ;
Ghazal, P ;
Howard, J ;
Lilley, KS ;
Gaskell, SJ ;
Brass, A ;
Hubbard, SJ ;
Oliver, SG ;
Paton, NW .
BMC GENOMICS, 2004, 5 (1)
[6]   HUPO brain proteome project: aims and needs in proteomics [J].
Hamacher, M ;
Meyer, HE .
EXPERT REVIEW OF PROTEOMICS, 2005, 2 (01) :1-3
[7]   The human Proteome organization a - Mission to advance proteome knowledge [J].
Hanash, S ;
Celis, JE .
MOLECULAR & CELLULAR PROTEOMICS, 2002, 1 (06) :413-414
[8]   The HUPO proteomics standards initiative - Overcoming the fragmentation of proteomics data [J].
Hermjakob, Henning .
PROTEOMICS, 2006, :34-38
[9]   The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible [J].
Hermjakob, Henning ;
Apweiler, Rolf .
EXPERT REVIEW OF PROTEOMICS, 2006, 3 (01) :1-3
[10]   Data hoarding is harming proteomics [3] [J].
Noble, William Stafford .
Nature Biotechnology, 2004, 22 (10)