First-principles studies of C-13NMR chemical shift tensors of amino acids in crystal state

被引:29
作者
Chen, X
Zhan, CG [1 ]
机构
[1] Ctr China Normal Univ, Coll Chem, Wuhan 430079, Peoples R China
[2] Univ Kentucky, Coll Pharm, Dept Pharmaceut Sci, Lexington, KY 40536 USA
来源
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM | 2004年 / 682卷 / 1-3期
关键词
amino acid; C-13 chemical shift; magnetic shielding; crystal environment; hydrogen bonding;
D O I
10.1016/j.theochem.2004.05.027
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A series of gauge-independent atomic orbital (GIAO) magnetic shielding calculations with ab initio Hartree-Fock (HF) and densityfunctional theory (DFT) methods were performed on alanine, asparagine, aspartic acid, cysteine, glutamine, glycine, histidine, serine, and tyrosine in crystal state to study their C-13 NMR chemical shift tensors. The GIAO calculations on the amino acids were performed with and without inclusion of the crystal environment. Compared to previous computational studies reported in literature, this study accounts for more complete crystal environmental effects on the C-13 NMR chemical shifts and, therefore, provides calculated results in better agreement with the experimental data. For each amino acid considered, the crystal environment included in the calculations includes all molecules having hydrogen bonds with the target molecule. It has been shown that the C-13 NMR chemical shift tensors, particularly the principal components 811 and 22, calculated without inclusion of the crystal environment significantly differ from the corresponding experimental data for the carbon atoms that are close to a hydrogen bond in the crystal, although the calculated isotropic C-13 chemical shifts are in good agreement with the experimental data. The GIAO calculations including the crystal environment with both the HF and DFT methods can significantly improve the calculated C-13 chemical shift tensors. The results calculated with the DFT method are slightly better than the corresponding results with the HF method. The good agreement between the calculated and experimental results indicate that the significant crystal environmental effects on the principal components of C-13 chemical shift tensors of the amino acids are mainly attributed to the hydrogen bonding of amino acid with its environment. When all the hydrogen bonds of amino acid with its environment are included explicitly in the GIAO calculation with a supermolecule model, the calculated C-13 chemical shift tensors, are in good agreement with the corresponding experimental data. This insight obtained from studying the crystal environmental effects on C-13 chemical shift tensors of amino acids in crystal state could also be useful for future computational studies of the protein environmental effects on C-13 chemical shift tensors of amino acid residues of proteins. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:73 / 82
页数:10
相关论文
共 32 条
[1]   INTERMOLECULAR HYDROGEN-BONDING EFFECT ON C-13 NMR CHEMICAL-SHIFTS OF GLYCINE RESIDUE CARBONYL CARBONS OF PEPTIDES IN THE SOLID-STATE [J].
ANDO, S ;
ANDO, I ;
SHOJI, A ;
OZAKI, T .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1988, 110 (11) :3380-3386
[2]   HYDROGEN-BONDING EFFECT ON C-13 NMR CHEMICAL-SHIFTS OF L-ALANINE RESIDUE CARBONYL CARBONS OF PEPTIDES IN THE SOLID-STATE [J].
ASAKAWA, N ;
KUROKI, S ;
KUROSU, H ;
ANDO, I ;
SHOJI, A ;
OZAKI, T .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (09) :3261-3265
[3]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[4]   LOCALLY DENSE BASIS-SETS FOR CHEMICAL-SHIFT CALCULATIONS [J].
CHESNUT, DB ;
MOORE, KD .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1989, 10 (05) :648-659
[5]   PREDICTING C-13 NUCLEAR-MAGNETIC-RESONANCE CHEMICAL SHIELDING TENSORS IN ZWITTERIONIC L-THREONINE AND L-TYROSINE VIA QUANTUM-CHEMISTRY [J].
DEDIOS, AC ;
LAWS, DD ;
OLDFIELD, E .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (17) :7784-7786
[6]   CHEMICAL-SHIFTS OF CARBONYL CARBONS IN PEPTIDES AND PROTEINS [J].
DEDIOS, AC ;
OLDFIELD, E .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (25) :11485-11488
[7]   CRYSTAL AND MOLECULAR STRUCTURE OF L-ASPARTIC ACID [J].
DERISSEN, JL ;
ENDEMAN, HJ ;
PEERDEMA.AF .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL CRYSTALLOGRAPHY AND CRYSTAL CHEMISTRY, 1968, B 24 :1349-&
[8]   SELF-CONSISTENT PERTURBATION-THEORY OF DIAMAGNETISM .1. GAUGE-INVARIANT LCAO METHOD FOR NMR CHEMICAL-SHIFTS [J].
DITCHFIELD, R .
MOLECULAR PHYSICS, 1974, 27 (04) :789-807
[9]   PRECISION NEUTRON-DIFFRACTION STRUCTURE DETERMINATION OF PROTEIN AND NUCLEIC-ACID COMPONENTS .10. COMPARISON BETWEEN CRYSTAL AND MOLECULAR-STRUCTURES OF L-TYROSINE AND L-TYROSINE HYDROCHLORIDE [J].
FREY, MN ;
KOETZLE, TF ;
LEHMANN, MS ;
HAMILTON, WC .
JOURNAL OF CHEMICAL PHYSICS, 1973, 58 (06) :2547-2556
[10]  
Frisch M.J., 2016, Gaussian 16 Revision C. 01. 2016, V01