Investigation of the nature of the methionine-π-interaction in β-hairpin peptide model systems

被引:76
作者
Tatko, CD [1 ]
Waters, ML [1 ]
机构
[1] Univ N Carolina, Dept Chem, Kenan & Venable Labs, Chapel Hill, NC 27599 USA
关键词
beta-hairpin peptide; peptide secondary structure; pairwise interactions; noncovalent interactions; sulfur-aromatic interactions; NMR;
D O I
10.1110/ps.04820104
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There are frequent contacts between aromatic rings and sulfur atoms in proteins. However, it is unclear to what degree this putative interaction is stabilizing and what the nature of the interaction is. We have investigated the aryl-sulfur interaction by placing a methionine residue diagonal to an aromatic ring on the same face of a beta-hairpin, which places the methionine side chain in close proximity to the aryl side chain. The methionine (Met)-aryl interaction was compared with an equivalent hydrophobic and cation-pi interaction in the context of the beta-hairpin. The interaction between phenylalanine (Phe), tryptophan (Trp), or cyclohexylalanine (Cha) and Met stabilized the beta-hairpin by -0.3 to -0.5 kcal mole(-1), as determined by double-mutant cycles. The peptides were subjected to thermal denaturations that suggest a hydrophobic driving force for the interactions between Met and Trp or Cha. The observed interaction of Met or norleucine (Nle) With Trp or Cha are. quite similar, implying a hydrophobic driving force for the Met-pi interaction. However. the thermodynamic data suggest that there may be some differences between the interaction of Met with Trp and Phe and that there may be a small thermodynamic component to the Met(...)Phe interaction.
引用
收藏
页码:2515 / 2522
页数:8
相关论文
共 26 条
[1]  
Alber F, 1998, PROTEINS, V31, P453, DOI 10.1002/(SICI)1097-0134(19980601)31:4<453::AID-PROT11>3.3.CO
[2]  
2-C
[3]   Modulation of flavin recognition and redox properties through donor atom-π interactions [J].
Breinlinger, EC ;
Keenan, CJ ;
Rotello, VM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (34) :8606-8609
[4]   COMPLEXES OF BENZENE WITH FORMAMIDE AND METHANETHIOL AS MODELS FOR INTERACTIONS OF PROTEIN SUBSTRUCTURES [J].
CHENEY, BV ;
SCHULZ, MW ;
CHENEY, J .
BIOCHIMICA ET BIOPHYSICA ACTA, 1989, 996 (1-2) :116-124
[5]   ON THE ROLE OF METHIONINE RESIDUES IN THE SEQUENCE-INDEPENDENT RECOGNITION OF NONPOLAR PROTEIN SURFACES [J].
GELLMAN, SH .
BIOCHEMISTRY, 1991, 30 (27) :6633-6636
[6]   NMR evidence for the nucleation of a β-hairpin peptide conformation in water by an Asn-Gly type I′ β-turn sequence [J].
Griffiths-Jones, SR ;
Maynard, AJ ;
Sharman, GJ ;
Searle, MS .
CHEMICAL COMMUNICATIONS, 1998, (07) :789-790
[7]   Dissecting the stability of a β-hairpin peptide that folds in water:: NMR and molecular dynamics analysis of the β-turn and β-strand contributions to folding [J].
Griffiths-Jones, SR ;
Maynard, AJ ;
Searle, MS .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (05) :1051-1069
[8]   Non-hydrogen bond interactions involving the methionine sulfur atom [J].
Pal, D ;
Chakrabarti, P .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2001, 19 (01) :115-128
[9]   Different types of interactions involving cysteine sulfhydryl group in proteins [J].
Pal, D ;
Chakrabarti, P .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1998, 15 (06) :1059-1072
[10]   Amino acid neighbours and detailed conformational analysis of cysteines in proteins [J].
Petersen, MTN ;
Jonson, PH ;
Petersen, SB .
PROTEIN ENGINEERING, 1999, 12 (07) :535-548