Preferential orientation of natural lambdoid prophages and bacterial chromosome organization

被引:18
作者
Campbell, AM [1 ]
机构
[1] Stanford Univ, Dept Biol Sci, Stanford, CA 94305 USA
关键词
lambdoid prophages; defective prophages; dif site; tRNA genes; GC skew;
D O I
10.1006/tpbi.2002.1604
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
All known lambdoid prophages of Escherichia coli have the same orientation with respect to direction of chromosomal replication. This includes 12 prophages that are replicated in one direction and five in the other. Among candidate explanations, the most amenable to experimental study is an effect on dif site function in assuring chromosomal segregation. This is but one of numerous examples of strand bias in the E coli genome, all of which may interact with one another. (C) 2002 Elsevier Science (USA).
引用
收藏
页码:503 / 507
页数:5
相关论文
共 23 条
[1]   The complete genome sequence of Escherichia coli K-12 [J].
Blattner, FR ;
Plunkett, G ;
Bloch, CA ;
Perna, NT ;
Burland, V ;
Riley, M ;
ColladoVides, J ;
Glasner, JD ;
Rode, CK ;
Mayhew, GF ;
Gregor, J ;
Davis, NW ;
Kirkpatrick, HA ;
Goeden, MA ;
Rose, DJ ;
Mau, B ;
Shao, Y .
SCIENCE, 1997, 277 (5331) :1453-+
[2]  
BREWER BJ, 1990, BACTERIAL CHROMOSOME, P61
[3]  
CAMPBELL A, 1990, UCLA SYM BI, V122, P191
[4]   LAMBDOID PHAGES AS ELEMENTS OF BACTERIAL GENOMES (INTEGRASE PHAGE21 ESCHERICHIA-COLI K-12 ICD GENE) [J].
CAMPBELL, A ;
SCHNEIDER, SJ ;
SONG, B .
GENETICA, 1992, 86 (1-3) :259-267
[5]  
CAMPBELL A, 2002, MOBILE DNA, V2, P1024
[6]  
CAMPBELL A, 2002, IN PRESS DNA RES
[7]   CHROMOSOMAL INSERTION SITES FOR PHAGES AND PLASMIDS [J].
CAMPBELL, AM .
JOURNAL OF BACTERIOLOGY, 1992, 174 (23) :7495-7499
[8]   Nucleotide sequence of coliphage HK620 and the evolution of lambdoid phages [J].
Clark, AJ ;
Inwood, W ;
Cloutier, T ;
Dhillon, TS .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 311 (04) :657-679
[9]  
Corre J, 2000, GENETICS, V154, P39
[10]   Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 (supplement) [J].
Hayashi, T ;
Makino, K ;
Ohnishi, M ;
Kurokawa, K ;
Ishii, K ;
Yokoyama, K ;
Han, CG ;
Ohtsubo, E ;
Nakayama, K ;
Murata, T ;
Tanaka, M ;
Tobe, T ;
Iida, T ;
Takami, H ;
Honda, T ;
Sasakawa, C ;
Ogasawara, N ;
Yasunaga, T ;
Kuhara, S ;
Shiba, T ;
Hattori, M ;
Shinagawa, H .
DNA RESEARCH, 2001, 8 (01) :47-52