Genome-Wide Association Scan Meta-Analysis Identifies Three Loci Influencing Adiposity and Fat Distribution

被引:390
作者
Lindgren, Cecilia M. [1 ]
Heid, Iris M. [2 ,3 ]
Randall, Joshua C. [1 ]
Lamina, Claudia [2 ,4 ]
Steinthorsdottir, Valgerdur [5 ]
Qi, Lu [6 ,7 ]
Speliotes, Elizabeth K. [8 ,9 ]
Thorleifsson, Gudmar [5 ]
Willer, Cristen J. [10 ]
Herrera, Blanca M. [1 ,11 ]
Jackson, Anne U. [10 ]
Lim, Noha [12 ]
Scheet, Paul [10 ,12 ]
Soranzo, Nicole [13 ,14 ]
Amin, Najaf [15 ]
Aulchenko, Yurii S. [15 ]
Chambers, John C. [16 ]
Drong, Alexander [1 ]
Luan, Jian'an [17 ]
Lyon, Helen N. [9 ,18 ]
Rivadeneira, Fernando [15 ,19 ]
Sanna, Serena [20 ]
Timpson, Nicholas J. [21 ]
Zillikens, M. Carola [19 ]
Zhao, Jing Hua [17 ]
Almgren, Peter [22 ]
Bandinelli, Stefania [23 ]
Bennett, Amanda J. [11 ]
Bergman, Richard N. [24 ]
Bonnycastle, Lori L. [25 ]
Bumpstead, Suzannah J. [14 ]
Chanock, Stephen J. [26 ]
Cherkas, Lynn [13 ]
Chines, Peter [25 ]
Coin, Lachlan [27 ]
Cooper, Cyrus [28 ]
Crawford, Gabriel [29 ]
Doering, Angela [2 ]
Dominiczak, Anna [30 ]
Doney, Alex S. F. [31 ]
Ebrahim, Shah [32 ]
Elliott, Paul [27 ]
Erdos, Michael R. [25 ]
Estrada, Karol [19 ]
Ferrucci, Luigi [33 ]
Fischer, Guido [2 ]
Forouhi, Nita G.
Gieger, Christian [2 ]
Grallert, Harald [2 ]
Groves, Christopher J. [11 ]
机构
[1] Univ Oxford, Wellcome Trust Ctr Human Genet, Oxford, England
[2] Natl Res Ctr Environm & Hlth, Helmholtz Zentrum Munchen, Inst Epidemiol, Neuherberg, Germany
[3] Univ Regensburg, Inst Epidemiol & Prevent Med, Regensburg, Germany
[4] Innsbruck Med Univ, Dept Med Genet Mol & Clin Pharmacol, Div Genet Epidemiol, Innsbruck, Austria
[5] deCODE Genet, Reykjavik, Iceland
[6] Harvard Univ, Sch Publ Hlth, Dept Nutr, Boston, MA 02115 USA
[7] Brigham & Womens Hosp, Dept Med, Channing Lab, Boston, MA USA
[8] Harvard Univ, Massachusetts Gen Hosp, Sch Med, Dept Gastroenterol, Boston, MA USA
[9] Broad Inst MIT & Harvard, Metab Initiat & Program Med & Populat Genet, Boston, MA USA
[10] Univ Michigan, Dept Biostat, Ctr Stat Genet, Ann Arbor, MI 48109 USA
[11] Univ Oxford, Dept Endocrinol & Metab, Oxford Ctr Diabet, Oxford, England
[12] Clin Pharmacol & Discovery Med, Med Genet, King Of Prussia, PA USA
[13] Kings Coll London, Dept Twin Res & Genet Epidemiol, London WC2R 2LS, England
[14] Wellcome Trust Sanger Inst, Cambridge, England
[15] Erasmus MC, Dept Epidemiol, Rotterdam, Netherlands
[16] Univ London Imperial Coll Sci Technol & Med, Dept Epidemiol & Publ Hlth, London, England
[17] Addenbrookes Hosp, Inst Metab Sci, MRC, Epidemiol Unit, Cambridge, England
[18] Childrens Hosp, Div Genet & Endocrinol, Program Genom, Boston, MA 02115 USA
[19] Erasmus MC, Dept Internal Med, Rotterdam, Netherlands
[20] CNR, Ist Neurogenet & Neurofarmacol, Cagliari, Italy
[21] Univ Bristol, MRC, Ctr Causal Anal Translat Epidemiol, Bristol, Avon, England
[22] Lund Univ, Malmo Univ Hosp, Diabet & Endocrinol Res Unit, Dept Clin Sci, Malmo, Sweden
[23] ASF, Geriatr Unit, Florence, Italy
[24] Univ So Calif, Sch Med, Los Angeles, CA USA
[25] NHGRI, Bethesda, MD 20892 USA
[26] NCI, Radiat Oncol Branch, Ctr Canc Res, NIH,Dept Hlth & Human Serv, Bethesda, MD 20892 USA
[27] Univ London Imperial Coll Sci Technol & Med, Dept Epidemiol & Publ Hlth, London, England
[28] Univ Southampton, MRC, Epidemiol Resource Ctr, Southampton, Hants, England
[29] Broad Inst MIT & Harvard, Program Med & Populat Genet, Cambridge, MA USA
[30] Univ Glasgow, BHF Glasgow Cardiovasc Res Ctr, Glasgow, Lanark, Scotland
[31] Univ Dundee, Ninewells Hosp & Med Sch, Div Med & Therapeut, Diabet Res Grp, Dundee DD1 9SY, Scotland
[32] Univ Bristol, Dept Social Med, Bristol, Avon, England
[33] NIA, Clin Res Branch, Baltimore, MD 21224 USA
[34] Univ Texas SW Med Ctr Dallas, Ctr Human Nutr, Dallas, TX 75390 USA
[35] St Georges Univ London, Div Community Hlth Sci, London, England
[36] Karolinska Inst, Dept Med, Atherosclerosis Res Unit, Stockholm, Sweden
[37] KTL Natl Publ Hlth Inst, Helsinki, Finland
[38] Univ Southampton, Div Human Genet, Southampton, Hants, England
[39] Malmska Municipal Hlth Ctr & Hosp, Folkhalsan Res Ctr, Pietarsaari, Finland
[40] Univ Helsinki, Cent Hosp, Dept Med, Helsinki, Finland
[41] Finnish Inst Occpat Hlth, Oulu, Finland
[42] Ctr Natl Genotypage, Evry, France
[43] Queen Mary Univ London, Barts & London Sch Med & Dent, William Harvey Res Inst, London, England
[44] Umea Univ, Dept Surg & Perioperat Sci, Sect Sports Med, Umea, Sweden
[45] Umea Univ Hosp, Dept Community Med & Rehabil, Sect Geriatr, S-90185 Umea, Sweden
[46] Erasmus MC, Dept Clin Genet, Rotterdam, Netherlands
[47] Univ Dundee, Ninewells Hosp & Med Sch, Biomed Res Ctr, Populat Pharmacogenet Grp, Dundee DD1 9SY, Scotland
[48] Univ Oxford, Dept Cardiovasc Med, Oxford, England
[49] Umea Univ Hosp, Med Sect, Dept Publ Hlth & Clin Med, Genet Epidemiol & Clin Res Grp, S-90185 Umea, Sweden
[50] Univ Oulu, Dept Clin Chem, Oulu, Finland
来源
PLOS GENETICS | 2009年 / 5卷 / 06期
基金
英国医学研究理事会; 英国惠康基金; 英国生物技术与生命科学研究理事会; 芬兰科学院; 美国国家卫生研究院; 瑞士国家科学基金会;
关键词
FTO GENE; WAIST CIRCUMFERENCE; ADULT OBESITY; ENVIRONMENTAL-CONDITIONS; INSULIN-RESISTANCE; SEQUENCE VARIANTS; COMMON VARIANTS; EXPRESSION; IMPUTATION; HEIGHT;
D O I
10.1371/journal.pgen.1000508
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
To identify genetic loci influencing central obesity and fat distribution, we performed a meta-analysis of 16 genome-wide association studies (GWAS, N = 38,580) informative for adult waist circumference (WC) and waist-hip ratio (WHR). We selected 26 SNPs for follow-up, for which the evidence of association with measures of central adiposity (WC and/or WHR) was strong and disproportionate to that for overall adiposity or height. Follow-up studies in a maximum of 70,689 individuals identified two loci strongly associated with measures of central adiposity; these map near TFAP2B (WC, P = 1.9x10(-11)) and MSRA (WC, P = 8.9x10(-9)). A third locus, near LYPLAL1, was associated with WHR in women only (P = 2.6x10(-8)). The variants near TFAP2B appear to influence central adiposity through an effect on overall obesity/fat-mass, whereas LYPLAL1 displays a strong female-only association with fat distribution. By focusing on anthropometric measures of central obesity and fat distribution, we have identified three loci implicated in the regulation of human adiposity.
引用
收藏
页数:13
相关论文
共 52 条
[1]   Merlin-rapid analysis of dense genetic maps using sparse gene flow trees [J].
Abecasis, GR ;
Cherny, SS ;
Cookson, WO ;
Cardon, LR .
NATURE GENETICS, 2002, 30 (01) :97-101
[2]   In vivo modulation of Hmgic reduces obesity [J].
Anand, A ;
Chada, K .
NATURE GENETICS, 2000, 24 (04) :377-380
[3]  
AULCHENKO YS, 2008, NAT GENET
[4]   Adiposity and mortality in men [J].
Baik, I ;
Ascherio, A ;
Rimm, EB ;
Giovannucci, E ;
Spiegelman, D ;
Stampfer, MJ ;
Willett, WC .
AMERICAN JOURNAL OF EPIDEMIOLOGY, 2000, 152 (03) :264-271
[5]  
Battista S, 1999, CANCER RES, V59, P4793
[6]   Common genetic variation near MC4R is associated with waist circumference and insulin resistance [J].
Chambers, John C. ;
Elliott, Paul ;
Zabaneh, Delilah ;
Zhang, Weihua ;
Li, Yun ;
Froguel, Philippe ;
Balding, David ;
Scott, James ;
Kooner, Jaspal S. .
NATURE GENETICS, 2008, 40 (06) :716-718
[7]   Tankyrase is a Golgi-associated mitogen-activated protein kinase substrate that interacts with IRAP in GLUT4 vesicles [J].
Chi, NW ;
Lodish, HF .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (49) :38437-38444
[8]   Practical aspects of imputation-driven meta-analysis of genome-wide association studies [J].
de Bakker, Paul I. W. ;
Ferreira, Manuel A. R. ;
Jia, Xiaoming ;
Neale, Benjamin M. ;
Raychaudhuri, Soumya ;
Voight, Benjamin F. .
HUMAN MOLECULAR GENETICS, 2008, 17 :R122-R128
[9]   Genomic control for association studies [J].
Devlin, B ;
Roeder, K .
BIOMETRICS, 1999, 55 (04) :997-1004
[10]   Variation in FTO contributes to childhood obesity and severe adult obesity [J].
Dina, Christian ;
Meyre, David ;
Gallina, Sophie ;
Durand, Emmanuelle ;
Koerner, Antje ;
Jacobson, Peter ;
Carlsson, Lena M. S. ;
Kiess, Wieland ;
Vatin, Vincent ;
Lecoeur, Cecile ;
Delplanque, Jerome ;
Vaillant, Emmanuel ;
Pattou, Francois ;
Ruiz, Juan ;
Weill, Jacques ;
Levy-Marchal, Claire ;
Horber, Fritz ;
Potoczna, Natascha ;
Hercberg, Serge ;
Le Stunff, Catherine ;
Bougneres, Pierre ;
Kovacs, Peter ;
Marre, Michel ;
Balkau, Beverley ;
Cauchi, Stephane ;
Chevre, Jean-Claude ;
Froguel, Philippe .
NATURE GENETICS, 2007, 39 (06) :724-726