Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package

被引:781
作者
Giorgino, Toni [1 ]
机构
[1] Univ Pavia, Lab Biomed Informat, Dipartimento Informat & Sistemist, I-27100 Pavia, Italy
来源
JOURNAL OF STATISTICAL SOFTWARE | 2009年 / 31卷 / 07期
关键词
timeseries; alignment; dynamic programming; dynamic time warping; RECOGNITION; ALGORITHMS;
D O I
10.18637/jss.v031.i07
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Dynamic time warping is a popular technique for comparing time series, providing both a distance measure that is insensitive to local compression and stretches and the warping which optimally deforms one of the two input series onto the other. A variety of algorithms and constraints have been discussed in the literature. The dtw package provides an unification of them; it allows R users to compute time series alignments mixing freely a variety of continuity constraints, restriction windows, endpoints, local distance definitions, and so on. The package also provides functions for visualizing alignments and constraints using several classic diagram types.
引用
收藏
页码:1 / 24
页数:24
相关论文
共 32 条
[1]   Aligning gene expression time series with time warping algorithms [J].
Aach, J ;
Church, GM .
BIOINFORMATICS, 2001, 17 (06) :495-508
[2]  
[Anonymous], 2004, P KDD WORKSH MIN TEM
[3]  
[Anonymous], 2007, ICDE
[4]  
[Anonymous], 2021, R foundation for statistical computing Computer software
[5]   On-line signature recognition based on VQ-DTW [J].
Faundez-Zanuy, Marcos .
PATTERN RECOGNITION, 2007, 40 (03) :981-992
[6]  
Gabadinho Alexis., 2009, Mining Sequence Data in R with the TraMineR Package: A Users Guide for Version 1.2
[7]   Bioconductor: open software development for computational biology and bioinformatics [J].
Gentleman, RC ;
Carey, VJ ;
Bates, DM ;
Bolstad, B ;
Dettling, M ;
Dudoit, S ;
Ellis, B ;
Gautier, L ;
Ge, YC ;
Gentry, J ;
Hornik, K ;
Hothorn, T ;
Huber, W ;
Iacus, S ;
Irizarry, R ;
Leisch, F ;
Li, C ;
Maechler, M ;
Rossini, AJ ;
Sawitzki, G ;
Smith, C ;
Smyth, G ;
Tierney, L ;
Yang, JYH ;
Zhang, JH .
GENOME BIOLOGY, 2004, 5 (10)
[8]  
GIORGINO T, 2009, DTW DYNAMIC TIME WAR
[9]  
Goldner V., 2000, Studies in Gender and Sexuality, V1, P1
[10]   Supervision of bioprocesses using a dynamic time warping algorithm [J].
Gollmer, K ;
Posten, C .
CONTROL ENGINEERING PRACTICE, 1996, 4 (09) :1287-1295