The crystal structures of the ferric and ferrous forms of the heme complex of HmuO, a heme oxygenase of Corynebacterium diphtheriae

被引:89
作者
Hirotsu, S
Chu, GC
Unno, M
Lee, DS
Yoshida, T
Park, SY
Shiro, Y
Ikeda-Saito, M [1 ]
机构
[1] Tohoku Univ, Inst Multidisciplinary Res Adv Mat, Aoba Ku, Sendai, Miyagi 9808577, Japan
[2] Case Western Reserve Univ, Sch Med, Dept Physiol & Biophys, Cleveland, OH 44106 USA
[3] Yamagata Univ, Sch Med, Dept Biochem, Yamagata 9909585, Japan
[4] RIKEN Harima inst, Inst Phys & Chem Res, Sayo, Hyogo 6795143, Japan
关键词
D O I
10.1074/jbc.M311631200
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Crystal structures of the ferric and ferrous heme complexes of HmuO, a 24-kDa heme oxygenase of Corynebacterium diphtheriae, have been refined to 1.4 and 1.5 Angstrom resolution, respectively. The HmuO structures show that the heme group is closely sandwiched between the proximal and distal helices. The imidazole group of His-20 is the proximal heme ligand, which closely eclipses the beta- and delta-meso axis of the porphyrin ring. A long range hydrogen bonding network is present, connecting the iron-bound water ligand to the solvent water molecule. This enables proton transfer from the solvent to the catalytic site, where the oxygen activation occurs. In comparison to the ferric complex, the proximal and distal helices move closer to the heme plane in the ferrous complex. Together with the kinked distal helix, this movement leaves only the alpha-meso carbon atom accessible to the iron-bound dioxygen. The heme pocket architecture is responsible for stabilization of the ferric hydroperoxo-active intermediate by preventing premature heterolytic O-O bond cleavage. This allows the enzyme to oxygenate selectively at the alpha-meso carbon in HmuO catalysis.
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收藏
页码:11937 / 11947
页数:11
相关论文
共 56 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[3]   Crystallization and preliminary X-ray diffraction analysis of a recombinant bacterial heme oxygenase (Hmu O) from Corynebacterium diphtheriae [J].
Chu, GC ;
Park, SY ;
Shiro, Y ;
Yoshida, T ;
Ikeda-Saito, M .
JOURNAL OF STRUCTURAL BIOLOGY, 1999, 126 (02) :171-174
[4]   Heme degradation as catalyzed by a recombinant bacterial heme oxygenase (Hmu O) from Corynebacterium diphtheriae [J].
Chu, GC ;
Katakura, K ;
Zhang, XH ;
Yoshida, T ;
Ikeda-Saito, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (30) :21319-21325
[5]   The heme complex of Hmu O, a bacterial heme degradation enzyme from Corynebacterium diphtheriae -: Structure of the catalytic site [J].
Chu, GC ;
Tomita, T ;
Sönnichsen, FD ;
Yoshida, T ;
Ikeda-Saito, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (35) :24490-24496
[6]   Histidine 20, the crucial proximal axial heme ligand of bacterial heme oxygenase Hmu O from Corynebacterium diphtheriae [J].
Chu, GC ;
Katakura, K ;
Tomita, T ;
Zhang, XH ;
Sun, DY ;
Sato, M ;
Sasahara, M ;
Kayama, T ;
Ikeda-Saito, M ;
Yoshida, T .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (23) :17494-17500
[7]   Autocatalytic radical reactions in physiological prosthetic heme modification [J].
Colas, C ;
de Montellano, PRO .
CHEMICAL REVIEWS, 2003, 103 (06) :2305-2332
[8]   Catalytic mechanism of heme oxygenase through EPR and ENDOR of cryoreduced oxy-heme oxygenase and its Asp 140 mutants [J].
Davydov, R ;
Kofman, V ;
Fujii, H ;
Yoshida, T ;
Ikeda-Saito, M ;
Hoffman, BM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (08) :1798-1808
[9]   Hydroperoxy-heme oxygenase generated by cryoreduction catalyzes the formation of α-meso-hydroxyheme as detected by EPR and ENDOR [J].
Davydov, RM ;
Yoshida, T ;
Ikeda-Saito, M ;
Hoffman, BM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (45) :10656-10657
[10]   NPAS2: A gas-responsive transcription factor [J].
Dioum, EM ;
Rutter, J ;
Tuckerman, JR ;
Gonzalez, G ;
Gilles-Gonzalez, MA ;
McKnight, SL .
SCIENCE, 2002, 298 (5602) :2385-2387