Accurate quantitation of standard peptides used for quantitative proteomics

被引:19
作者
Bordeerat, Narisa K. [2 ]
Georgieva, Nadia I. [2 ]
Klapper, David G. [3 ]
Collins, Leonard B. [4 ]
Cross, Tyra J. [5 ]
Borchers, Christoph H. [5 ,6 ]
Swenberg, James A. [2 ,4 ]
Boysen, Gunnar [1 ,2 ,4 ]
机构
[1] Univ Arkansas Med Sci, Fay W Boozman Coll Publ Hlth Environm & Occupat H, Dept Environm & Occupat Hlth, Little Rock, AR 72205 USA
[2] Univ N Carolina, Sch Publ Hlth, Dept Environm Sci & Engn, Chapel Hill, NC 27599 USA
[3] Univ N Carolina, Sch Med, Dept Microbiol & Immunol, Chapel Hill, NC 27599 USA
[4] Univ N Carolina, Sch Publ Hlth, Ctr Environm Hlth & Susceptibil, Chapel Hill, NC USA
[5] Univ Victoria, Genome British Columbia Prote Ctr, Victoria, BC, Canada
[6] Univ Victoria, Dept Biochem & Microbiol, Victoria, BC, Canada
关键词
Peptide standards; Quality control; Quantitative analysis; AMINO-ACIDS; PROTEIN; QUANTIFICATION; EXPRESSION;
D O I
10.1002/pmic.200900043
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
MS-based proteomics has become an indispensable tool in system biology generating a need for accurate and precise quantitation of peptide standards. The presented method utilizes ultra performance LC-MS/MS (UPLC-MS/MS) to accurately quantify peptide standards at concentrations of 0.1-10 mu M. The ability for accurate quantitation of micro-molar concentrations has the advantages that quantitation can be performed routinely with high precision and the high sensitivity of the method minimizes the amounts required.
引用
收藏
页码:3939 / 3944
页数:6
相关论文
共 27 条
[1]   Mass spectrometry-based proteomics [J].
Aebersold, R ;
Mann, M .
NATURE, 2003, 422 (6928) :198-207
[2]  
Aggarwal Kunal, 2006, Briefings in Functional Genomics & Proteomics, V5, P112, DOI 10.1093/bfgp/ell018
[3]   Neuroendocrine inhibition of glucose production and resistance to cancer in dwarf mice [J].
Alderman, J. Mckee ;
Flurkey, Kevin ;
Brooks, Natasha L. ;
Naik, Sneha B. ;
Gutierrez, Jonathan M. ;
Srinivas, Urmila ;
Ziara, Kristen B. ;
Jing, Linhong ;
Boysen, Gunnar ;
Bronson, Rod ;
Klebanov, Simon ;
Chen, Xian ;
Swenberg, James A. ;
Stridsberg, Mats ;
Parker, Carol E. ;
Harrison, David E. ;
Combs, Terry P. .
EXPERIMENTAL GERONTOLOGY, 2009, 44 (1-2) :26-33
[4]  
BOYSEN G, CANC RES, V64, P8517
[5]   Isotope-labeled protein standards [J].
Brun, Virginie ;
Dupuis, Alain ;
Adrait, Annie ;
Marcellin, Marlene ;
Thomas, Damien ;
Court, Magali ;
Vandenesch, Francois ;
Garin, Jerome .
MOLECULAR & CELLULAR PROTEOMICS, 2007, 6 (12) :2139-2149
[6]   Toward Systeme International d'Unite-traceable protein quantification: From amino acids to proteins [J].
Burkitt, William I. ;
Pritchard, Caroline ;
Arsene, Cristian ;
Henrion, Andre ;
Bunk, David ;
O'Connor, Gavin .
ANALYTICAL BIOCHEMISTRY, 2008, 376 (02) :242-251
[7]  
CHAIT BT, 2000, Patent No. 0013025
[8]   Protein Standard Absolute Quantification (PSAQ) for improved investigation of staphylococcal food poisoning outbreaks [J].
Dupuis, Alain ;
Hennekinne, Jacques-Antoine ;
Garin, Jerome ;
Brun, Virginie .
PROTEOMICS, 2008, 8 (22) :4633-4636
[9]   Hemoglobin adduct levels in rat and mouse treated with 1,2:3,4-diepoxybutane [J].
Fred, C ;
Kautiainen, A ;
Athanassiadis, L ;
Törnqvist, M .
CHEMICAL RESEARCH IN TOXICOLOGY, 2004, 17 (06) :785-794
[10]   Quantitative analysis of N-terminal valine peptide adducts specific for 1,2-epoxy-3-butene [J].
Georgieva, Nadia I. ;
Boysen, Gunnar ;
Upton, Patricia B. ;
Jayaraj, Karupiah ;
Gold, Avram ;
Swenberg, James A. .
CHEMICO-BIOLOGICAL INTERACTIONS, 2007, 166 (1-3) :219-225