MUSIC in triple-resonance experiments:: Amino acid type-selective 1H-15N correlations

被引:79
作者
Schubert, M [1 ]
Smalla, M [1 ]
Schmieder, P [1 ]
Oschkinat, H [1 ]
机构
[1] Forschungsinst Mol Pharmakol, D-10315 Berlin, Germany
关键词
triple resonance; proteins; editing; HSQC; assignment;
D O I
10.1006/jmre.1999.1881
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Amino acid type-selective triple-resonance experiments can be of great help for the assignment of protein spectra, since they help to remove ambiguities in either manual or automated assignment procedures. Here, modified triple-resonance experiments that yield amino acid type-selective H-1-N-15 correlations are presented. They are based on novel coherence transfer schemes, the MUSIC pulse sequence elements, that replace the initial INEPT transfer and are selective for XH2 or XH3 (X can be N-15 or C-13). The desired amino acid type is thereby selected based on the topology of the side chain. Experiments for Gly (G-HSQC); Ala (A-HSQC); Thr, Val, Ile, and Ala (TAVI-HSQC); Thr and Ala (TA-HSQC), as well as Asn and Gin (N-HSQC and QN-HSQC), are described, The new experiments are recorded as two-dimensional experiments and therefore need only small amounts of spectrometer time. The performance of the experiments is demonstrated with the application to two protein domains, (C) 1999 Academic Press.
引用
收藏
页码:34 / 43
页数:10
相关论文
共 53 条
[1]   Selective correlation of amide groups to glycine alpha protons and of arginine guanidine groups to delta protons in proteins by multiple quantum spectroscopy [J].
Bazzo, R ;
Cicero, DO ;
Barbato, G .
JOURNAL OF MAGNETIC RESONANCE, 1999, 136 (01) :15-21
[2]   H-1 and N-15 NMR assignment and solution structure of the SH3 domain of spectrin: Comparison of unrefined and refined structure sets with the crystal structure [J].
Blanco, FJ ;
Ortiz, AR ;
Serrano, L .
JOURNAL OF BIOMOLECULAR NMR, 1997, 9 (04) :347-357
[3]   4-DIMENSIONAL HETERONUCLEAR TRIPLE RESONANCE NMR METHODS FOR THE ASSIGNMENT OF BACKBONE NUCLEI IN PROTEINS [J].
BOUCHER, W ;
LAUE, ED ;
CAMPBELLBURK, S ;
DOMAILLE, PJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (06) :2262-2264
[4]   IMPROVED 4D-NMR EXPERIMENTS FOR THE ASSIGNMENT OF BACKBONE NUCLEI IN C-13/N-15 LABELED PROTEINS [J].
BOUCHER, W ;
LAUE, ED ;
CAMPBELLBURK, SL ;
DOMAILLE, PJ .
JOURNAL OF BIOMOLECULAR NMR, 1992, 2 (06) :631-637
[5]   REVERSE POLARIZATION TRANSFER THROUGH MAXIMUM ORDER MULTIPLE-QUANTUM COHERENCE - A REVERSE POMMIE SEQUENCE [J].
BULSING, JM ;
BROOKS, WM ;
FIELD, J ;
DODDRELL, DM .
CHEMICAL PHYSICS LETTERS, 1984, 104 (2-3) :229-234
[6]   POLARIZATION TRANSFER VIA AN INTERMEDIATE MULTIPLE-QUANTUM STATE OF MAXIMUM ORDER [J].
BULSING, JM ;
BROOKS, WM ;
FIELD, J ;
DODDRELL, DM .
JOURNAL OF MAGNETIC RESONANCE, 1984, 56 (01) :167-173
[7]   Tools for the automated assignment of high-resolution three-dimensional protein NMR spectra based on pattern recognition techniques [J].
Croft, D ;
Kemmink, J ;
Neidig, KP ;
Oschkinat, H .
JOURNAL OF BIOMOLECULAR NMR, 1997, 10 (03) :207-219
[8]   Amino-acid-type-selective triple-resonance experiments [J].
Dotsch, V ;
Oswald, RE ;
Wagner, G .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1996, 110 (01) :107-111
[9]   Selective identification of threonine, valine, and isoleucine sequential connectivities with a TVI-CBCACONH experiment [J].
Dotsch, V ;
Oswald, RE ;
Wagner, G .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1996, 110 (03) :304-308
[10]   Editing for amino-acid type in CBCACONH experiments based on the C-13 beta-C-13 gamma coupling [J].
Dotsch, V ;
Wagner, G .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1996, 111 (03) :310-313