Epigenetic mechanisms in mammals

被引:350
作者
Kim, J. K. [1 ]
Samaranayake, M. [1 ]
Pradhan, S. [1 ]
机构
[1] New England Biolabs Inc, Ipswich, MA 01938 USA
关键词
DNA methylation; histone modification; chromatin; methylation spreading; silencing; EMBRYONIC STEM-CELLS; HISTONE LYSINE METHYLATION; POLYCOMB GROUP PROTEINS; NOVO DNA METHYLATION; X-INACTIVATION; DE-NOVO; GENE-EXPRESSION; CPG-ISLANDS; CYTOSINE METHYLATION; DEVELOPMENTAL REGULATORS;
D O I
10.1007/s00018-008-8432-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA and histone methylation are linked and subjected to mitotic inheritance in mammals. Yet how methylation is propagated and maintained between successive cell divisions is not fully understood. A series of enzyme families that can add methylation marks to cytosine nucleobases, and lysine and arginine amino acid residues has been discovered. Apart from methyltransferases, there are also histone modification enzymes and accessory proteins, which can facilitate and/or target epigenetic marks. Several lysine and arginine demethylases have been discovered recently, and the presence of an active DNA demethylase is speculated in mammalian cells. A mammalian methyl DNA binding protein MBD2 and de novo DNA methyltransferase DNMT3A and DNMT3B are shown experimentally to possess DNA demethylase activity. Thus, complex mammalian epigenetic mechanisms appear to be dynamic yet reversible along with a well-choreographed set of events that take place during mammalian development.
引用
收藏
页码:596 / 612
页数:17
相关论文
共 150 条
  • [1] New nomenclature for chromatin-modifying enzymes
    Allis, C. David
    Berger, Shelley L.
    Cote, Jacques
    Dent, Sharon
    Jenuwien, Thomas
    Kouzarides, Tony
    Pillus, Lorraine
    Reinberg, Danny
    Shi, Yang
    Shiekhattar, Ramin
    Shilatifard, Ali
    Workman, Jerry
    Zhang, Yi
    [J]. CELL, 2007, 131 (04) : 633 - 636
  • [2] [Anonymous], P NATL ACAD SCI USA
  • [3] Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic
    Augui, S.
    Filion, G. J.
    Huart, S.
    Nora, E.
    Guggiari, M.
    Maresca, M.
    Stewart, A. F.
    Heard, E.
    [J]. SCIENCE, 2007, 318 (5856) : 1632 - 1636
  • [4] REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis
    Ballas, N
    Grunseich, C
    Lu, DD
    Speh, JC
    Mandel, G
    [J]. CELL, 2005, 121 (04) : 645 - 657
  • [5] The many faces of REST oversee epigenetic programming of neuronal genes
    Ballas, N
    Mandel, G
    [J]. CURRENT OPINION IN NEUROBIOLOGY, 2005, 15 (05) : 500 - 506
  • [6] Barlow DP., 2007, Epigenetics, P357
  • [7] Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
    Bell, AC
    Felsenfeld, G
    [J]. NATURE, 2000, 405 (6785) : 482 - 485
  • [8] A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    Bernstein, BE
    Mikkelsen, TS
    Xie, XH
    Kamal, M
    Huebert, DJ
    Cuff, J
    Fry, B
    Meissner, A
    Wernig, M
    Plath, K
    Jaenisch, R
    Wagschal, A
    Feil, R
    Schreiber, SL
    Lander, ES
    [J]. CELL, 2006, 125 (02) : 315 - 326
  • [9] ACTIVATION OF MAMMALIAN DNA METHYLTRANSFERASE BY CLEAVAGE OF A ZN BINDING REGULATORY DOMAIN
    BESTOR, TH
    [J]. EMBO JOURNAL, 1992, 11 (07) : 2611 - 2617
  • [10] Covalent modifications of histones during development and disease pathogenesis
    Bhaumik, Sukesh R.
    Smith, Edwin
    Shilatifard, Ali
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (11) : 1008 - 1016