The structure of a stable intermediate in the A ⇆ B DNA helix transition

被引:100
作者
Ng, HL [1 ]
Kopka, ML [1 ]
Dickerson, RE [1 ]
机构
[1] Univ Calif Los Angeles, Inst Mol Biol, Los Angeles, CA 90095 USA
关键词
D O I
10.1073/pnas.040571197
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The DNA dodecamer CATGGGCCCATG in a crystal structure of resolution 1.3 Angstrom has a conformation intermediate between A and B DNA. This trapping of a stable intermediate suggests that the A and B DNA families are not discrete, as previously believed. The structure supports a base-centered rather than a backbone-centered mechanism for the A <-> B transition mediated by guanine tracts. Interconversion between A and B DNA provides another means for regulating protein-DNA recognition.
引用
收藏
页码:2035 / 2039
页数:5
相关论文
共 42 条
[1]  
[Anonymous], OXFORD HDB NUCL ACID
[2]  
[Anonymous], 1999, OXFORD HDB NUCL ACID
[3]  
Arnott S., 1999, OXFORD HDB NUCL ACID, P1
[4]  
Berman HM, 1997, BIOPOLYMERS, V44, P23, DOI 10.1002/(SICI)1097-0282(1997)44:1<23::AID-BIP3>3.0.CO
[5]  
2-1
[6]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[7]  
Calladine C. R., 1997, Understanding DNA: The Molecule and How It Works, V2nd ed.
[8]   A BASE-CENTERED EXPLANATION OF THE B-TO-A TRANSITION IN DNA [J].
CALLADINE, CR ;
DREW, HR .
JOURNAL OF MOLECULAR BIOLOGY, 1984, 178 (03) :773-781
[9]  
Cheatham TE, 1996, J MOL BIOL, V259, P434
[10]  
Cowtan K., 1994, JOINT CCP4 ESF EACBM, V31, P34