Modified van der Waals atomic radii for hydrogen bonding based on electron density topology

被引:75
作者
Klein, Roger A. [1 ]
机构
[1] Univ Bonn, Inst Physiol Chem, D-53115 Bonn, Germany
关键词
D O I
10.1016/j.cplett.2006.04.109
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Summation of van der Waals (VDW) atomic radii is commonly used as a criterion for whether donor and acceptor atoms, such as hydrogen and oxygen, nitrogen or fluorine, are close enough to form a hydrogen bond, being applied, together with a geometric constraint, as part of the pararneterisation in determining whether or not a particular force-field 'detects' a hydrogen bond. In general, VDW radii overestimate the donor-acceptor separation at which hydrogen bonding may be possible. A new method, based on electron density topology, is proposed which gives modified transferable atomic radii more in keeping with spectroscopic evidence. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:128 / 133
页数:6
相关论文
共 33 条
[1]   BOUNDS ON THE DECAY OF ELECTRON-DENSITIES WITH SCREENING [J].
AHLRICHS, R ;
HOFFMANNOSTENHOF, M ;
HOFFMANNOSTENHOF, T ;
MORGAN, JD .
PHYSICAL REVIEW A, 1981, 23 (05) :2106-2117
[2]  
Arunan E, 2002, CURR SCI INDIA, V82, P533
[3]   A bond path: A universal indicator of bonded interactions [J].
Bader, RFW .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (37) :7314-7323
[4]  
BADER RWF, 1990, INT MONOGRAPHS CHEM, V22, P1
[5]   VAN DER WAALS VOLUMES + RADII [J].
BONDI, A .
JOURNAL OF PHYSICAL CHEMISTRY, 1964, 68 (03) :441-+
[6]   FUNCTION FOR TESTING THE RELIABILITY OF LONG-RANGE ELECTRON-DENSITY IN ATOMS [J].
CARLTON, TS .
JOURNAL OF CHEMICAL PHYSICS, 1979, 70 (01) :584-585
[7]  
Clementi E., 1974, Atomic Data and Nuclear Data Tables, V14, P177, DOI 10.1016/S0092-640X(74)80016-1
[8]   Experimental charge densities and intermolecular interactions: Electrostatic and topological analysis of DL-histidine [J].
Coppens, P ;
Abramov, Y ;
Carducci, M ;
Korjov, B ;
Novozhilova, I ;
Alhambra, C ;
Pressprich, MR .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (11) :2585-2593
[9]   Experimental charge density of α-glycine at 23 K [J].
Destro, R ;
Roversi, P ;
Barzaghi, M ;
Marsh, RE .
JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (05) :1047-1054
[10]  
Dittrich B, 2000, CHEM-EUR J, V6, P2582, DOI 10.1002/1521-3765(20000717)6:14<2582::AID-CHEM2582>3.0.CO