Essential genes on metabolic maps

被引:90
作者
Gerdes, Svetlana [1 ]
Edwards, Robert
Kubal, Michael
Fonstein, Michael
Stevens, Rick
Osterman, Andrei
机构
[1] Interpretat Genome, Burr Ridge, IL 60527 USA
[2] Burnham Inst, La Jolla, CA 92037 USA
[3] San Diego State Univ, Ctr Microbial Sci, San Diego, CA 92813 USA
[4] Univ Chicago, Dept Comp Sci, Chicago, IL 60637 USA
[5] Argonne Natl Lab, Math & Comp Sci Div, Argonne, IL 60439 USA
[6] Cleveland BioLabs Inc, Cleveland, OH 44106 USA
关键词
D O I
10.1016/j.copbio.2006.08.006
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Within the past five years genome-scale gene essentiality data sets have been published for ten diverse bacterial species. These data are a rich source of information about cellular networks that we are only beginning to explore. The analysis of these data, very heterogeneous in nature, is a challenging task. Even the definition of 'essential genes' in various genome-scale studies varies from genes 'absolutely required for survival' to those 'strongly contributing to fitness' and robust competitive growth. A comparative analysis of gene essentiality across multiple organisms based on projection of experimentally observed essential genes to functional roles in a collection of metabolic pathways and subsystems is emerging as a powerful tool of systems biology.
引用
收藏
页码:448 / 456
页数:9
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