A distant evolutionary relationship between GPI-specific phospholipase D and bacterial phosphatidylcholine-preferring phospholipase C

被引:5
作者
Rigden, DJ [1 ]
机构
[1] Univ Liverpool, Sch Biol Sci, Liverpool L69 7ZB, Merseyside, England
关键词
glycosylphosphatidylinositol anchor; phospholipase D; distant homology; molecular modelling; trimetal catalytic site;
D O I
10.1016/j.febslet.2004.05.071
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In eukaryotes some surface proteins are attached to the plasma membrane by a glycosylphosphatidylinositol (GPI) anchor. A GPI-specific phospholipase D (GPI-PLD) activity has been characterized and implicated in the regulation of anchoring, thereby influencing the dispersal of anchored proteins or their maintenance on the cell surface, and possibly in cell signalling. Despite its biological and medical importance, little is known of the structure of GPI-PLD. Here, a distant relationship between the catalytic domains of GPI-PLD and some bacterial phospholipases C is demonstrated. A model of the GPI-PLD catalytic site sheds light on catalysis and highlights possibilities for design of improved and more specific GPI-PLD inhibitors. The databases contain hitherto unnoticed close homologues of GPI-PLD from yeast and Dictyostefium discoideum. (C) 2004 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:229 / 234
页数:6
相关论文
共 64 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   Using X-ray crystallography of the Asp55Asn mutant of the phosphatidylcholine-preferring phospholipase C from Bacillus cereus to support the mechanistic role of Asp55 as the general base [J].
Antikainen, NM ;
Monzingo, AF ;
Franklin, CL ;
Robertus, JD ;
Martin, SF .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2003, 417 (01) :81-86
[3]   Molecular recognition of protein-ligand complexes: Applications to drug design [J].
Babine, RE ;
Bender, SL .
CHEMICAL REVIEWS, 1997, 97 (05) :1359-1472
[4]   ALSCRIPT - A TOOL TO FORMAT MULTIPLE SEQUENCE ALIGNMENTS [J].
BARTON, GJ .
PROTEIN ENGINEERING, 1993, 6 (01) :37-40
[5]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkr1065, 10.1093/nar/gkh121]
[6]   Yeast gpi8p is essential for GPI anchor attachment onto proteins [J].
Benghezal, M ;
Benachour, A ;
Rusconi, S ;
Aebi, M ;
Conzelmann, A .
EMBO JOURNAL, 1996, 15 (23) :6575-6583
[7]   The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 [J].
Boeckmann, B ;
Bairoch, A ;
Apweiler, R ;
Blatter, MC ;
Estreicher, A ;
Gasteiger, E ;
Martin, MJ ;
Michoud, K ;
O'Donovan, C ;
Phan, I ;
Pilbout, S ;
Schneider, M .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :365-370
[8]  
Brunner G, 1996, ANTICANCER RES, V16, P2513
[9]   Structure prediction meta server [J].
Bujnicki, JM ;
Elofsson, A ;
Fischer, D ;
Rychlewski, L .
BIOINFORMATICS, 2001, 17 (08) :750-751
[10]   The Jalview Java']Java alignment editor [J].
Clamp, M ;
Cuff, J ;
Searle, SM ;
Barton, GJ .
BIOINFORMATICS, 2004, 20 (03) :426-427