Leveraging Symmetries of Static Atomic Multipole Electrostatics in Molecular Dynamics Simulations

被引:52
作者
Bereau, Tristan [1 ]
Kramer, Christian [2 ,3 ]
Meuwly, Markus [1 ]
机构
[1] Univ Basel, Dept Chem, CH-4056 Basel, Switzerland
[2] Univ Innsbruck, Inst Gen Inorgan & Theoret Chem, A-6020 Innsbruck, Austria
[3] Univ Innsbruck, CMBI, A-6020 Innsbruck, Austria
基金
瑞士国家科学基金会;
关键词
FORCE-FIELD; INTERACTION ENERGIES; CHARGE-DISTRIBUTION; ADDITIVE PROCEDURE; CONFORMATION; ENERGETICS; MECHANICS; DENSITY; TORQUES; MODEL;
D O I
10.1021/ct400803f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Multipole (MTP) electrostatics provides the means to describe anisotropic interactions in a rigorous and systematic manner. A number of earlier molecular dynamics (MD) implementations have increasingly relied on the use of molecular symmetry to reduce the (possibly large) number of MTP interactions. Here, we present a CHARMM implementation of MTP electrostatics in terms of spherical harmonics. By relying on a systematic set of reference-axis systems tailored to various chemical environments, we obtain an implementation that is both efficient and scalable for (bio)molecular systems. We apply the method to a series of halogenated compounds to show (i) energy conservation; (ii) improvements in reproducing thermodynamic properties compared to standard point-charge (PC) models; (iii) performance of the code; and (iv) better stabilization of a brominated ligand in a target protein, compared to a PC force field. The implementation provides interesting perspectives toward a dual PC/MTP resolution, a la QM/MM.
引用
收藏
页码:5450 / 5459
页数:10
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