Are network motifs the spandrels of cellular complexity?

被引:58
作者
Sole, Ricard V.
Valverde, Sergi
机构
[1] Univ Pompeu Fabra, ICREA, Complex Syst Lab, Barcelona 08003, Spain
[2] Santa Fe Inst, Santa Fe, NM 87501 USA
关键词
D O I
10.1016/j.tree.2006.05.013
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Cellular networks display modular organization at different levels, from small sets of genes exchanging signals in morphogenesis to large groups of proteins involved in cell death. At the smallest scale, minute groups of interacting proteins or genes, so-called. network motifs', have been suggested to be the functional building blocks of network biology. In this context, the relative abundance of a network motif would reflect its adaptive value. However, although the overabundance of motifs is non-random, recent studies by Mazurie et al. and by Kuo et al. show that motif abundance does not reflect their true adaptive value. Just as some architectural components emerge as a byproduct of a prior decision, common motifs might be a side effect of inevitable rules of genome growth and change.
引用
收藏
页码:419 / 422
页数:4
相关论文
共 18 条
[1]  
Banzhaf Wolfgang, 2004, Journal of Biological Physics and Chemistry, V4, P85, DOI 10.4024/2040405.jbpc.04.02
[2]   Transcriptional regulation by the numbers: models [J].
Bintu, L ;
Buchler, NE ;
Garcia, HG ;
Gerland, U ;
Hwa, T ;
Kondev, J ;
Phillips, R .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2005, 15 (02) :116-124
[3]   Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network -: art. no. 10 [J].
Dobrin, R ;
Beg, QK ;
Barabási, AL ;
Oltvai, ZN .
BMC BIOINFORMATICS, 2004, 5 (1)
[4]  
Gould S. J, 2002, STRUCTURE EVOLUTIONA, DOI [10.4159/9780674417922, DOI 10.4159/9780674417922]
[5]   SPANDRELS OF SAN-MARCO AND THE PANGLOSSIAN PARADIGM - A CRITIQUE OF THE ADAPTATIONIST PROGRAM [J].
GOULD, SJ ;
LEWONTIN, RC .
PROCEEDINGS OF THE ROYAL SOCIETY SERIES B-BIOLOGICAL SCIENCES, 1979, 205 (1161) :581-598
[6]   From molecular to modular cell biology [J].
Hartwell, LH ;
Hopfield, JJ ;
Leibler, S ;
Murray, AW .
NATURE, 1999, 402 (6761) :C47-C52
[7]   Topology of biological networks and reliability of information processing [J].
Klemm, K ;
Bornholdt, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (51) :18414-18419
[8]  
KUO PD, IN PRESS BIOSYSTEMS
[9]   An evolutionary and functional assessment of regulatory network motifs [J].
Mazurie, A ;
Bottani, S ;
Vergassola, M .
GENOME BIOLOGY, 2005, 6 (04)
[10]   Superfamilies of evolved and designed networks [J].
Milo, R ;
Itzkovitz, S ;
Kashtan, N ;
Levitt, R ;
Shen-Orr, S ;
Ayzenshtat, I ;
Sheffer, M ;
Alon, U .
SCIENCE, 2004, 303 (5663) :1538-1542