共 167 条
Polarization effects in molecular mechanical force fields
被引:267
作者:
Cieplak, Piotr
[1
]
Dupradeau, Francois-Yves
[2
]
Duan, Yong
[3
,4
]
Wang, Junmei
[5
]
机构:
[1] Burnham Inst Med Res, La Jolla, CA 92120 USA
[2] Univ Picardie Jules Verne, CNRS, UMR 6219, F-80037 Amiens, France
[3] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA
[4] Univ Calif Davis, Dept Appl Sci, Davis, CA 95616 USA
[5] Univ Texas SW Med Ctr Dallas, Dept Pharmacol, Dallas, TX 75390 USA
关键词:
DIPOLE INTERACTION-MODEL;
DYNAMICS SIMULATIONS;
FLUCTUATING CHARGE;
CONFORMATIONAL ENERGIES;
WATER CLUSTERS;
POINT-CHARGE;
ATOMIC POLARIZABILITIES;
ELECTRICAL RESPONSE;
LIGAND-BINDING;
LIQUID AMIDES;
D O I:
10.1088/0953-8984/21/33/333102
中图分类号:
O469 [凝聚态物理学];
学科分类号:
070205 ;
摘要:
The focus here is on incorporating electronic polarization into classical molecular mechanical force fields used for macromolecular simulations. First, we briefly examine currently used molecular mechanical force fields and the current status of intermolecular forces as viewed by quantum mechanical approaches. Next, we demonstrate how some components of quantum mechanical energy are effectively incorporated into classical molecular mechanical force fields. Finally, we assess the modeling methods of one such energy component-polarization energy-and present an overview of polarizable force fields and their current applications. Incorporating polarization effects into current force fields paves the way to developing potentially more accurate, though more complex, parameterizations that can be used for more realistic molecular simulations.
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页数:21
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