Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases

被引:261
作者
Forsberg, Zarah [1 ]
Mackenzie, Alasdair K. [1 ]
Sorlie, Morten [1 ]
Rohr, Asmund K. [2 ]
Helland, Ronny [3 ]
Arvai, Andrew S. [4 ]
Vaaje-Kolstad, Gustav [1 ]
Eijsink, Vincent G. H. [1 ]
机构
[1] Norwegian Univ Life Sci, Dept Chem Biotechnol & Food Sci, N-1432 As, Norway
[2] Univ Oslo, Dept Biosci, N-0316 Oslo, Norway
[3] Univ Tromso, Fac Sci & Technol, Norwegian Struct Biol Ctr, Dept Chem, N-9019 Tromso, Norway
[4] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Mol Biol, La Jolla, CA 92037 USA
关键词
GH61; CBM33; CHITIN-BINDING PROTEIN; ALPHA-CHITIN; CATALYTIC MECHANISM; SERRATIA-MARCESCENS; CRYSTAL-STRUCTURE; BETA-CHITIN; STREPTOMYCES; DEGRADATION; BIOMASS; ENZYME;
D O I
10.1073/pnas.1402771111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
For decades, the enzymatic conversion of cellulose was thought to rely on the synergistic action of hydrolytic enzymes, but recent work has shown that lytic polysaccharide monooxygenases (LPMOs) are important contributors to this process. We describe the structural and functional characterization of two functionally coupled cellulose-active LPMOs belonging to auxiliary activity family 10 (AA10) that commonly occur in cellulolytic bacteria. One of these LPMOs cleaves glycosidic bonds by oxidation of the C1 carbon, whereas the other can oxidize both C1 and C4. We thus demonstrate that C4 oxidation is not confined to fungal AA9-type LPMOs. X-ray crystallographic structures were obtained for the enzyme pair from Streptomyces coelicolor, solved at 1.3 angstrom (ScLPMO10B) and 1.5 angstrom (CelS2 or ScLPMO10C) resolution. Structural comparisons revealed differences in active site architecture that could relate to the ability to oxidize C4 (and that also seem to apply to AA9-type LPMOs). Despite variation in active site architecture, the two enzymes exhibited similar affinities for Cu2+ (12-31 nM), redox potentials (242 and 251 mV), and electron paramagnetic resonance spectra, with only the latter clearly different from those of chitin-active AA10-type LPMOs. We conclude that substrate specificity depends not on copper site architecture, but rather on variation in substrate binding and orientation. During cellulose degradation, the members of this LPMO pair act in synergy, indicating different functional roles and providing a rationale for the abundance of these enzymes in biomass-degrading organisms.
引用
收藏
页码:8446 / 8451
页数:6
相关论文
共 35 条
[1]
NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions [J].
Aachmann, Finn L. ;
Sorlie, Morten ;
Skjak-Braek, Gudmund ;
Eijsink, Vincent G. H. ;
Vaaje-Kolstad, Gustav .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (46) :18779-18784
[2]
Quantitative iTRAQ Secretome Analysis of Cellulolytic Thermobifida fusca [J].
Adav, Sunil S. ;
Ng, Chee Sheng ;
Arulmani, Manavalan ;
Sze, Siu Kwan .
JOURNAL OF PROTEOME RESEARCH, 2010, 9 (06) :3016-3024
[3]
Oxidative Cleavage of Cellulose by Fungal Copper-Dependent Polysaccharide Monooxygenases [J].
Beeson, William T. ;
Phillips, Christopher M. ;
Cate, Jamie H. D. ;
Marletta, Michael A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (02) :890-892
[4]
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris [J].
Berka, Randy M. ;
Grigoriev, Igor V. ;
Otillar, Robert ;
Salamov, Asaf ;
Grimwood, Jane ;
Reid, Ian ;
Ishmael, Nadeeza ;
John, Tricia ;
Darmond, Corinne ;
Moisan, Marie-Claude ;
Henrissat, Bernard ;
Coutinho, Pedro M. ;
Lombard, Vincent ;
Natvig, Donald O. ;
Lindquist, Erika ;
Schmutz, Jeremy ;
Lucas, Susan ;
Harris, Paul ;
Powlowski, Justin ;
Bellemare, Annie ;
Taylor, David ;
Butler, Gregory ;
de Vries, Ronald P. ;
Allijn, Iris E. ;
van den Brink, Joost ;
Ushinsky, Sophia ;
Storms, Reginald ;
Powell, Amy J. ;
Paulsen, Ian T. ;
Elbourne, Liam D. H. ;
Baker, Scott E. ;
Magnuson, Jon ;
LaBoissiere, Sylvie ;
Clutterbuck, A. John ;
Martinez, Diego ;
Wogulis, Mark ;
de Leon, Alfredo Lopez ;
Rey, Michael W. ;
Tsang, Adrian .
NATURE BIOTECHNOLOGY, 2011, 29 (10) :922-U222
[5]
Do New Cellulolytic Enzyme Preparations Affect the Industrial Strategies for High Solids Lignocellulosic Ethanol Production? [J].
Cannella, David ;
Jorgensen, Henning .
BIOTECHNOLOGY AND BIOENGINEERING, 2014, 111 (01) :59-68
[6]
A Bacillus amyloliquefaciens ChbB protein binds β- and α-chitin and has homologues in related strains [J].
Chu, HH ;
Hoang, V ;
Hofemeister, J ;
Schrempf, H .
MICROBIOLOGY-SGM, 2001, 147 :1793-1803
[7]
The catalytic mechanism of peptidylglycine α-hydroxylating monooxygenase investigated by computer simulation [J].
Crespo, Alejandro ;
Marti, Marcelo A. ;
Roitberg, Adrian E. ;
Amzel, L. Mario ;
Estrin, Dario A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (39) :12817-12828
[8]
DeLano WL, 2005, ABSTR PAP AM CHEM S, V230, pU1371
[9]
Comparative Study of Two Chitin-Active and Two Cellulose-Active AA10-Type Lytic Polysaccharide Monooxygenases [J].
Forsberg, Zarah ;
Rohr, Asmund Kjendseth ;
Mekasha, Sophanit ;
Andersson, K. Kristoff ;
Eijsink, Vincent G. H. ;
Vaaje-Kolstad, Gustav ;
Sorlie, Morten .
BIOCHEMISTRY, 2014, 53 (10) :1647-1656
[10]
Cleavage of cellulose by a CBM33 protein [J].
Forsberg, Zarah ;
Vaaje-Kolstad, Gustav ;
Westereng, Bjorge ;
Bunaes, Anne C. ;
Stenstrom, Yngve ;
MacKenzie, Alasdair ;
Sorlie, Morten ;
Horn, Svein J. ;
Eijsink, Vincent G. H. .
PROTEIN SCIENCE, 2011, 20 (09) :1479-1483