An empirical correlation between amide deuterium isotope effects on C-13(alpha) chemical shifts and protein backbone conformation

被引:53
作者
Ottiger, M [1 ]
Bax, A [1 ]
机构
[1] NIDDKD,CHEM PHYS LAB,NIH,BETHESDA,MD 20892
关键词
D O I
10.1021/ja9707466
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Three-dimensional, triple resonance NMR techniques are described for measurement of two-bond (intraresidual) and three-bond (sequential) amide deuterium isotope effects on C-13(alpha) chemical shifts. Measurements were carried out for uniformly N-15 and C-13 labeled human ubiquitin equilibrated in a 50% H2O/50% D2O mixed solvent. The three-bond isotope shift, (3) Delta C-alpha(ND), ranges from about 10-50 ppb, and, except for residues with positive phi angles and residues followed by Gly, its magnitude is described by (3) Delta C-alpha(ND) = 30.1 + 22.2 sin(psi) +/- 3.4 ppb. The two-bond isotope shift, (2) Delta C-alpha(ND), ranges from 70 to 116 ppb and is also dominated by the local backbone geometry at the C-alpha position: (2) Delta C-alpha(ND) = 93.1 + 10.1 sin(phi+62 degrees) + 12.0 sin(psi+42 degrees) +/- 4.1 ppb.
引用
收藏
页码:8070 / 8075
页数:6
相关论文
共 49 条
[1]   DEUTERIUM-INDUCED NMR ISOTOPE SHIFTS FOR C-13 RESONANCE FREQUENCIES OF NORBORNANE - QUANTITATIVE DATA FOR THE DIHEDRAL ANGLE DEPENDENCE OF VICINAL SHIFTS [J].
AYDIN, R ;
FRANKMOLLE, W ;
SCHMALZ, D ;
GUNTHER, H .
MAGNETIC RESONANCE IN CHEMISTRY, 1988, 26 (05) :408-411
[2]  
BERGER S, 1990, NMR BASIC PRINCIPLES, V22, P2
[3]  
BIAMONTI C, 1994, ADV BIOPHYS CHEM, V4, P51
[4]  
Brunger A. T., 1992, X PLOR VERSION 3 1 S
[5]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293
[6]  
DELAGLIO F, 1991, Journal of Biomolecular NMR, V1, P439, DOI 10.1007/BF02192865
[7]   SCALAR COUPLING-CONSTANTS - THEIR ANALYSIS AND THEIR APPLICATION FOR THE ELUCIDATION OF STRUCTURES [J].
EBERSTADT, M ;
GEMMECKER, G ;
MIERKE, DF ;
KESSLER, H .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION IN ENGLISH, 1995, 34 (16) :1671-1695
[8]   ASSIGNMENT OF SIDE-CHAIN C-13 RESONANCES IN PERDEUTERATED PROTEINS [J].
FARMER, BT ;
VENTERS, RA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (14) :4187-4188
[9]   ASSIGNMENT OF C-13 RESONANCES FROM CARBONYL GROUPS IN PEPTIDES [J].
FEENEY, J ;
PARTINGT.P ;
ROBERTS, GCK .
JOURNAL OF MAGNETIC RESONANCE, 1974, 13 (03) :268-274
[10]   A COMMON-SENSE APPROACH TO PEAK PICKING IN 2-DIMENSIONAL, 3-DIMENSIONAL, AND 4-DIMENSIONAL SPECTRA USING AUTOMATIC COMPUTER-ANALYSIS OF CONTOUR DIAGRAMS [J].
GARRETT, DS ;
POWERS, R ;
GRONENBORN, AM ;
CLORE, GM .
JOURNAL OF MAGNETIC RESONANCE, 1991, 95 (01) :214-220