RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics - art. no. 18 (Retracted article. See vol. 15, 243, 2015)

被引:1000
作者
Jobb, G
von Haeseler, A
Strimmer, K
机构
[1] Univ Munich, Dept Stat, D-80539 Munich, Germany
[2] Univ Dusseldorf, Dept Comp Sci, D-40225 Dusseldorf, Germany
[3] Forschungszentrum Julich, John Von Neumann Inst Comp, D-52425 Julich, Germany
关键词
D O I
10.1186/1471-2148-4-18
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Most analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with little programming experience. Results: TREEFINDER is an easy-to-use integrative platform-independent analysis environment for molecular phylogenetics. In this paper the main features of TREEFINDER ( version of April 2004) are described. TREEFINDER is written in ANSI C and Java and implements powerful statistical approaches for inferring gene tree and related analyzes. In addition, it provides a user-friendly graphical interface and a phylogenetic programming language. Conclusions: TREEFINDER is a versatile framework for analyzing phylogenetic data across different platforms that is suited both for exploratory as well as advanced studies.
引用
收藏
页数:9
相关论文
共 24 条
[1]  
[Anonymous], 1978, Atlas of protein sequence and structure
[2]  
Balding D., 2001, HDB STAT GENETICS, P179, DOI DOI 10.2307/2419615
[3]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[4]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[5]  
FELSENSTEIN J, 1993, PHYLIP PHYLOGENETIC
[6]  
Felsenstein Joseph, 2004, Inferring_phylogenies, V2
[7]   STATISTICAL TESTS OF MODELS OF DNA SUBSTITUTION [J].
GOLDMAN, N .
JOURNAL OF MOLECULAR EVOLUTION, 1993, 36 (02) :182-198
[8]  
GOLDMAN N, 1993, J MOL EVOL, V37, P650
[9]   DATING OF THE HUMAN APE SPLITTING BY A MOLECULAR CLOCK OF MITOCHONDRIAL-DNA [J].
HASEGAWA, M ;
KISHINO, H ;
YANO, TA .
JOURNAL OF MOLECULAR EVOLUTION, 1985, 22 (02) :160-174
[10]   A NEW METHOD FOR CALCULATING EVOLUTIONARY SUBSTITUTION RATES [J].
LANAVE, C ;
PREPARATA, G ;
SACCONE, C ;
SERIO, G .
JOURNAL OF MOLECULAR EVOLUTION, 1984, 20 (01) :86-93