Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control

被引:367
作者
Sosnowski, RG [1 ]
Tu, E [1 ]
Butler, WF [1 ]
OConnell, JP [1 ]
Heller, MJ [1 ]
机构
[1] NANOGEN INC,SAN DIEGO,CA 92121
关键词
D O I
10.1073/pnas.94.4.1119
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We have demonstrated that controlled electric fields can be used to regulate transport hybridization, and denaturation of single- and double-stranded oligonucleotides. Discrimination among oligonucleotide hybrids with widely varying binding strengths may be attained by simple adjustment of the electric field strength, When this approach Is used, electric field denaturation control allows single base pair mismatch discrimination to be carried out rapidly (<15 sec) and with high resolution, Electric field denaturation takes place at temperatures well below the melting point of the hybrids, and it may constitute a novel mechanism of DNA denaturation.
引用
收藏
页码:1119 / 1123
页数:5
相关论文
共 11 条
[1]   A NOVEL METHOD FOR NUCLEIC-ACID SEQUENCE DETERMINATION [J].
BAINS, W ;
SMITH, GC .
JOURNAL OF THEORETICAL BIOLOGY, 1988, 135 (03) :303-307
[2]  
DRMANAC R, 1989, GENOMICS, V4, P114
[3]  
EGGERS M, 1994, BIOTECHNIQUES, V17, P516
[4]   MULTIPLEXED BIOCHEMICAL ASSAYS WITH BIOLOGICAL CHIPS [J].
FODOR, SPA ;
RAVA, RP ;
HUANG, XHC ;
PEASE, AC ;
HOLMES, CP ;
ADAMS, CL .
NATURE, 1993, 364 (6437) :555-556
[5]   LIGHT-DIRECTED, SPATIALLY ADDRESSABLE PARALLEL CHEMICAL SYNTHESIS [J].
FODOR, SPA ;
READ, JL ;
PIRRUNG, MC ;
STRYER, L ;
LU, AT ;
SOLAS, D .
SCIENCE, 1991, 251 (4995) :767-773
[6]   DIRECT FLUORESCENCE ANALYSIS OF GENETIC POLYMORPHISMS BY HYBRIDIZATION WITH OLIGONUCLEOTIDE ARRAYS ON GLASS SUPPORTS [J].
GUO, Z ;
GUILFOYLE, RA ;
THIEL, AJ ;
WANG, RF ;
SMITH, LM .
NUCLEIC ACIDS RESEARCH, 1994, 22 (24) :5456-5465
[7]   DIRECT-DETECTION OF NUCLEIC-ACID HYBRIDIZATION ON THE SURFACE OF A CHARGE-COUPLED-DEVICE [J].
LAMTURE, JB ;
BEATTIE, KL ;
BURKE, BE ;
EGGERS, MD ;
EHRLICH, DJ ;
FOWLER, R ;
HOLLIS, MA ;
KOSICKI, BB ;
REICH, RK ;
SMITH, SR ;
VARMA, RS ;
HOGAN, ME .
NUCLEIC ACIDS RESEARCH, 1994, 22 (11) :2121-2125
[8]  
MAHAJAN S, 1993, HDB SEMICONDUCTORS, V3
[9]   ANALYZING AND COMPARING NUCLEIC-ACID SEQUENCES BY HYBRIDIZATION TO ARRAYS OF OLIGONUCLEOTIDES - EVALUATION USING EXPERIMENTAL-MODELS [J].
SOUTHERN, EM ;
MASKOS, U ;
ELDER, JK .
GENOMICS, 1992, 13 (04) :1008-1017
[10]   THE USE OF SYNTHETIC OLIGONUCLEOTIDES AS HYBRIDIZATION PROBES .2. HYBRIDIZATION OF OLIGONUCLEOTIDES OF MIXED SEQUENCE TO RABBIT BETA-GLOBIN DNA [J].
WALLACE, RB ;
JOHNSON, MJ ;
HIROSE, T ;
MIYAKE, T ;
KAWASHIMA, EH ;
ITAKURA, K .
NUCLEIC ACIDS RESEARCH, 1981, 9 (04) :879-894