Replacing cRNA targets with cDNA reduces microarray cross-hybridization

被引：52

作者：

Eklund, Aron C. ^{[1
]}

Turner, Leah R.

Chen, Pengchin

Jensen, Roderick V.

deFeo, Gianfranco

Kopf-Sill, Anne R.

Szallasi, Zoltan

机构：

[1] Harvard Univ, Sch Med, Harvard Mit Div Hlth Sci & Technol, Childrens Hosp Informat Program, Boston, MA 02115 USA

[2] Brigham & Womens Hosp, Ctr Neurol Dis, Cambridge, MA 02139 USA

[3] NuGEN Technol Inc, Unit A, San Carlos, CA 94070 USA

[4] Univ Massachusetts, Dept Phys, Boston, MA 02125 USA

来源：

NATURE BIOTECHNOLOGY | 2006年 / 24卷 / 09期

关键词：

SEQUENCE DEPENDENCE; DNA; MISMATCHES; THERMODYNAMICS; AMPLIFICATION;

D O I：

10.1038/nbt0906-1071

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

引用

页码：1071 / 1073

页数：4

共 19 条

[1] Nearest-neighbor thermodynamics of internal A•C mismatches in DNA:: Sequence dependence and pH effects [J].

Allawi, HT ;

SantaLucia, J .

BIOCHEMISTRY, 1998, 37 (26) :9435-9444

[2] Nearest neighbor thermodynamic parameters for internal G•A mismatches in DNA [J].

Allawi, HT ;

SantaLucia, J .

BIOCHEMISTRY, 1998, 37 (08) :2170-2179

[3] Increased DNA microarray hybridization specificity using sscDNA targets [J].

Barker, CS ;

Griffin, C ;

Dolganov, GM ;

Hanspers, K ;

Yang, JYH ;

Erle, DJ .

BMC GENOMICS, 2005, 6 (1)

[4]

Chudin E, 2002, GENOME BIOL, V3

[5] Linear mRNA amplification from as little as 5 ng total RNA for global gene expression analysis [J].

Dafforn, A ;

Chen, P ;

Deng, G ;

Herrler, M ;

Iglehart, D ;

Koritala, S ;

Lato, S ;

Pillarisetty, S ;

Purohit, R ;

Wang, M ;

Wang, S ;

Kurn, N .

BIOTECHNIQUES, 2004, 37 (05) :854-857

[6] Reliability and reproducibility issues in DNA microarray measurements [J].

Draghici, S ;

Khatri, P ;

Eklund, AC ;

Szallasi, Z .

TRENDS IN GENETICS, 2006, 22 (02) :101-109

[7] Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer [J].

Hughes, TR ;

Mao, M ;

Jones, AR ;

Burchard, J ;

Marton, MJ ;

Shannon, KW ;

Lefkowitz, SM ;

Ziman, M ;

Schelter, JM ;

Meyer, MR ;

Kobayashi, S ;

Davis, C ;

Dai, HY ;

He, YDD ;

Stephaniants, SB ;

Cavet, G ;

Walker, WL ;

West, A ;

Coffey, E ;

Shoemaker, DD ;

Stoughton, R ;

Blanchard, AP ;

Friend, SH ;

Linsley, PS .

NATURE BIOTECHNOLOGY, 2001, 19 (04) :342-347

[8] Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments [J].

Johnson, JM ;

Edwards, S ;

Shoemaker, D ;

Schadt, EE .

TRENDS IN GENETICS, 2005, 21 (02) :93-102

[9] Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 [J].

Kampa, D ;

Cheng, J ;

Kapranov, P ;

Yamanaka, M ;

Brubaker, S ;

Cawley, S ;

Drenkow, J ;

Piccolboni, A ;

Bekiranov, S ;

Helt, G ;

Tammana, H ;

Gingeras, TR .

GENOME RESEARCH, 2004, 14 (03) :331-342

[10] Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications [J].

Kurn, N ;

Chen, PC ;

Heath, JD ;

Kopf-Sill, A ;

Stephens, KM ;

Wang, SL .

CLINICAL CHEMISTRY, 2005, 51 (10) :1973-1981

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