Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

被引：1821

作者：

Chalhoub, Boulos ^{[1
]}

Denoeud, France ^{[2
,3
,4
]}

Liu, Shengyi ^{[5
]}

Parkin, Isobel A. P. ^{[6
]}

Tang, Haibao ^{[7
,8
]}

Wang, Xiyin ^{[9
,10
]}

Chiquet, Julien ^{[11
]}

Belcram, Harry ^{[1
]}

Tong, Chaobo ^{[5
]}

Samans, Birgit ^{[12
]}

Correa, Margot ^{[2
]}

Da Silva, Corinne ^{[2
]}

Just, Jeremy ^{[1
]}

Falentin, Cyril ^{[13
]}

Koh, Chu Shin ^{[14
]}

Le Clainche, Isabelle ^{[1
]}

Bernard, Maria ^{[2
]}

Bento, Pascal ^{[2
]}

Noel, Benjamin ^{[2
]}

Labadie, Karine ^{[2
]}

Alberti, Adriana ^{[2
]}

Charles, Mathieu ^{[15
]}

Arnaud, Dominique ^{[1
]}

Guo, Hui ^{[9
]}

Daviaud, Christian ^{[16
]}

Alamery, Salman ^{[17
]}

Jabbari, Kamel ^{[1
,18
]}

Zhao, Meixia ^{[19
]}

Edger, Patrick P. ^{[20
]}

Chelaifa, Houda ^{[1
]}

Tack, David ^{[21
]}

Lassalle, Gilles ^{[13
]}

Mestiri, Imen ^{[1
]}

Schnel, Nicolas ^{[13
]}

Le Paslier, Marie-Christine ^{[15
]}

Fan, Guangyi ^{[22
]}

Renault, Victor ^{[23
]}

Bayer, Philippe E. ^{[17
]}

Golicz, Agnieszka A. ^{[17
]}

Manoli, Sahana ^{[17
]}

Lee, Tae-Ho ^{[9
]}

Vinh Ha Dinh Thi ^{[1
]}

Chalabi, Smahane ^{[1
]}

Hu, Qiong ^{[5
]}

Fan, Chuchuan ^{[24
]}

Tollenaere, Reece ^{[17
]}

Lu, Yunhai ^{[1
]}

Battail, Christophe ^{[2
]}

Shen, Jinxiong ^{[24
]}

Sidebottom, Christine H. D. ^{[14
]}

机构：

[1] Univ Evry Val dEssone, Inst Natl Rech Agron INRA, Unite Rech Genom Vegetale, UMR1165, F-91057 Evry, France

[2] Commissariat Energie Atom CEA, Inst Genom IG, F-91057 Evry, France

[3] Univ Evry Val dEssone, UMR 8030, F-91057 Evry, France

[4] Ctr Natl Rech Sci CNRS, UMR 8030, Evry, France

[5] Chinese Acad Agr Sci, Key Lab Biol & Genet Improvement Oil Crops, Minist Agr Peoples Republ China, Oil Crops Res Inst, Wuhan 430062, Peoples R China

[6] Agr & Agri Food Canada, Saskatoon, SK S7N 0X2, Canada

[7] J Craig Venter Inst, Rockville, MD 20850 USA

[8] Fujian Agr & Forestry Univ, Ctr Genom & Biotechnol, Fuzhou 350002, Fujian Province, Peoples R China

[9] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA

[10] Hebei United Univ, Sch Life Sci, Ctr Genom & Computat Biol, Tangshan 063000, Hebei, Peoples R China

[11] Univ Evry Val dEssone, Lab Math & Modelisat dEvry, CNRS, USC,INRA,UMR 8071, F-91057 Evry, France

[12] Univ Giessen, Res Ctr Biosyst Land Use & Nutr, Dept Plant Breeding, D-35392 Giessen, Germany

[13] INRA, Inst Genet Environm & Protect Plantes IGEPP, UMR1349, F-35653 Le Rheu, France

[14] Natl Res Council Canada, Saskatoon, SK S7N 0W9, Canada

[15] INRA, Ctr Natl Genotypage, CEA IG, US1279, F-91057 Evry, France

[16] CEA IG, Ctr Natl Genotypage, Lab Epigenet & Environm, F-91000 Evry, France

[17] Univ Queensland, Australian Ctr Plant Funct Genom, Sch Agr & Food Sci, St Lucia, Qld 4072, Australia

[18] Univ Cologne, Cologne Ctr Genom, D-50931 Cologne, Germany

[19] Purdue Univ, Dept Agron, W Lafayette, IN 47907 USA

[20] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

[21] Univ British Columbia, Dept Bot, Vancouver, BC, Canada

[22] Beijing Genome Inst Shenzhen, Shenzhen 518083, Peoples R China

[23] Fdn Jean Dausset, Ctr Etud Polymorphisme Humain, F-75010 Paris, France

[24] Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan 430070, Peoples R China

[25] Hunan Agr Univ, Coll Agron, Changsha 410128, Hunan, Peoples R China

[26] Chungnam Natl Univ, Dept Hort, Mol Genet & Genom Lab, Taejon 305764, South Korea

[27] Univ Arizona, Sch Plant Sci, IPlant Collaborat, Tucson, AZ USA

[28] Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England

[29] Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100193, Peoples R China

[30] Univ Missouri, Div Biol Sci, Columbia, MO 65211 USA

[31] So Cross Univ, Southern Cross Plant Sci, Lismore, NSW 2480, Australia

[32] Univ Western Australia, Sch Plant Biol, Nedlands, WA 6009, Australia

来源：

SCIENCE | 2014年 / 345卷 / 6199期

基金：

英国生物技术与生命科学研究理事会; 美国国家科学基金会;

关键词：

GENE; DOMINANCE; COTTON; PLANT;

D O I：

10.1126/science.1253435

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Oilseed rape (Brassica napus L.) was formed similar to 7500 years ago by hybridization between B. rapa and B. oleracea, followed by chromosome doubling, a process known as allopolyploidy. Together with more ancient polyploidizations, this conferred an aggregate 72x genome multiplication since the origin of angiosperms and high gene content. We examined the B. napus genome and the consequences of its recent duplication. The constituent A(n) and C-n subgenomes are engaged in subtle structural, functional, and epigenetic cross-talk, with abundant homeologous exchanges. Incipient gene loss and expression divergence have begun. Selection in B. napus oilseed types has accelerated the loss of glucosinolate genes, while preserving expansion of oil biosynthesis genes. These processes provide insights into allopolyploid evolution and its relationship with crop domestication and improvement.

引用

页码：950 / 953

页数：4

共 24 条

[1] A generic and tribal synopsis of the Brassicaceae (Cruciferae) [J].

Al-Shehbaz, Ihsan A. .

TAXON, 2012, 61 (05) :931-954

[2] Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers [J].

Allender, Charlotte J. ;

King, Graham J. .

BMC PLANT BIOLOGY, 2010, 10

[3] Transcriptomic Shock Generates Evolutionary Novelty in a Newly Formed, Natural Allopolyploid Plant [J].

Buggs, Richard J. A. ;

Zhang, Linjing ;

Miles, Nicholas ;

Tate, Jennifer A. ;

Gao, Lu ;

Wei, Wu ;

Schnable, Patrick S. ;

Barbazuk, W. Brad ;

Soltis, Pamela S. ;

Soltis, Douglas E. .

CURRENT BIOLOGY, 2011, 21 (07) :551-556

[4]

Darwin C., 1905, VARIATION ANIMALS PL, V2, P398

[5] High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L [J].

Delourme, Regine ;

Falentin, Cyril ;

Fomeju, Berline Fopa ;

Boillot, Marie ;

Lassalle, Gilles ;

Andre, Isabelle ;

Duarte, Jorge ;

Gauthier, Valerie ;

Lucante, Nicole ;

Marty, Amandine ;

Pauchon, Maryline ;

Pichon, Jean-Philippe ;

Ribiere, Nicolas ;

Trotoux, Gwenn ;

Blanchard, Philippe ;

Riviere, Nathalie ;

Martinant, Jean-Pierre ;

Pauquet, Jerome .

BMC GENOMICS, 2013, 14

[6] MOLECULAR TAGGING OF THE DWARF BREIZH (BZH) GENE IN BRASSICA-NAPUS [J].

FOISSET, N ;

DELOURME, R ;

BARRET, P ;

RENARD, M .

THEORETICAL AND APPLIED GENETICS, 1995, 91 (05) :756-761

[7] Two Evolutionarily Distinct Classes of Paleopolyploidy [J].

Garsmeur, Olivier ;

Schnable, James C. ;

Almeida, Ana ;

Jourda, Cyril ;

D'Hont, Angelique ;

Freeling, Michael .

MOLECULAR BIOLOGY AND EVOLUTION, 2014, 31 (02) :448-454

[8] A COMPARATIVE TRANSCRIPTOMIC STUDY OF AN ALLOTETRAPLOID AND ITS DIPLOID PROGENITORS ILLUSTRATES THE UNIQUE ADVANTAGES AND CHALLENGES OF RNA-SEQ IN PLANT SPECIES [J].

Ilut, Daniel C. ;

Coate, Jeremy E. ;

Luciano, Amelia K. ;

Owens, Thomas G. ;

May, Gregory D. ;

Farmer, Andrew ;

Doyle, Jeff J. .

AMERICAN JOURNAL OF BOTANY, 2012, 99 (02) :383-396

[9] SOAP: short oligonucleotide alignment program [J].

Li, Ruiqiang ;

Li, Yingrui ;

Kristiansen, Karsten ;

Wang, Jun .

BIOINFORMATICS, 2008, 24 (05) :713-714

[10]

Liu H. L., 2000, RAPESEED GENETICS BR, P1

← 1 2 3 →