Influence of microhydration on the ionization energy thresholds of thymine:: Comparisons of theoretical calculations with experimental values

被引:28
作者
Close, DM
Crespo-Hernández, CE
Gorb, L
Leszczynski, J
机构
[1] E Tennessee State Univ, Dept Phys, Johnson City, TN 37614 USA
[2] Ohio State Univ, Dept Chem, Columbus, OH 43210 USA
[3] Jackson State Univ, Computat Ctr Mol Modeling Struct & Interact, Dept Chem, Jackson, MS 39217 USA
关键词
D O I
10.1021/jp061064k
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In the present study the ionization energy thresholds (IETs) of thymine, and thymine keto-enol tautomers, have been calculated (with the B3LYP, and P3 levels of theory using the standard 6-31 + + G(d,p) basis set) with 1-3 water molecules placed in the first hydration shell. Calculations show there is a distinct effect of microhydration on the IET of thymine. The first water molecule is seen to decrease the IET by about 0.1 eV, whereas the second and third water molecules cause a further decrease of less than 0.1 eV each. The changes in IET calculated here for thymine with 1-3 waters of hydration are smaller than the experimental values determined by Kim et al. (J. Phys. Chem. 1996, 100, 7933). Therefore calculations have been performed on the microhydrated keto-enol tautomers of thymine. The calculated results on the keto-enol tautomers are seen to be in better agreement with the experimental results. However, the keto-enol thymine tautomers are considerably higher in energy than the canonical form of thymine, and there is presently no good evidence that these thymine tautomers are actually present in a supersonic jet-cooled experiment.
引用
收藏
页码:7485 / 7490
页数:6
相关论文
共 24 条
[1]   A new definition of cavities for the computation of solvation free energies by the polarizable continuum model [J].
Barone, V ;
Cossi, M ;
Tomasi, J .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (08) :3210-3221
[2]  
BOYS SB, 1970, MOL PHYS, V19, P140
[3]   THE ELECTRONIC-SPECTRA OF THE PYRIMIDINE-BASES URACIL AND THYMINE IN A SUPERSONIC MOLECULAR-BEAM [J].
BRADY, BB ;
PETEANU, LA ;
LEVY, DH .
CHEMICAL PHYSICS LETTERS, 1988, 147 (06) :538-543
[4]  
CANCES MT, 1997, J CHEM PHYS, V107, P3032, DOI DOI 10.1063/1.474659
[5]   Theoretical study of the interaction between thymine and water. Protonation and deprotonation enthalpies and comparison with uracil [J].
Chandra, AK ;
Nguyen, MT ;
Zeegers-Huyskens, T .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (29) :6010-6016
[6]   Calculation of the ionization potentials of the DNA bases in aqueous medium [J].
Close, DM .
JOURNAL OF PHYSICAL CHEMISTRY A, 2004, 108 (46) :10376-10379
[7]   The influence of microhydration on the ionization energy thresholds of uracil and thymine [J].
Close, DM ;
Crespo-Hernández, CE ;
Gorb, L ;
Leszczynski, J .
JOURNAL OF PHYSICAL CHEMISTRY A, 2005, 109 (41) :9279-9283
[8]   Ab initio ionization energy thresholds of DNA and RNA bases in gas phase and in aqueous solution [J].
Crespo-Hernández, CE ;
Arce, R ;
Ishikawa, Y ;
Gorb, L ;
Leszczynski, J ;
Close, DM .
JOURNAL OF PHYSICAL CHEMISTRY A, 2004, 108 (30) :6373-6377
[9]   IR-UV double resonance spectroscopy of guanine-H2O clusters [J].
Crews, B ;
Abo-Riziq, A ;
Grace, L ;
Callahan, M ;
Kabelác, M ;
Hobza, P ;
de Vries, MS .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2005, 7 (16) :3015-3020
[10]   Electron binding energies of nucleobases and nucleotides [J].
Dolgounitcheva, O ;
Zakrzewski, VG ;
Ortiz, JV .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2002, 90 (4-5) :1547-1554