Overcoming codon bias:: A method for high-level overexpression of Plasmodium and other AT-rich parasite genes in Escherichia coli

被引:143
作者
Baca, AM
Hol, WGJ
机构
[1] Univ Washington, Howard Hughes Med Inst, Dept Bioengn, Biomol Struct Ctr, Seattle, WA 98195 USA
[2] Univ Washington, Howard Hughes Med Inst, Dept Biol Struct & Biochem, Biomol Struct Ctr, Seattle, WA 98195 USA
关键词
argU; ileX; glyT; Plasmodium falciparum; rare codon; RIG-plasmid;
D O I
10.1016/S0020-7519(00)00019-9
中图分类号
R38 [医学寄生虫学]; Q [生物科学];
学科分类号
07 [理学]; 0710 [生物学]; 09 [农学]; 100103 [病原生物学];
摘要
Parasite genes often use codons which are rarely used in the highly expressed genes of Escherichia coli, possibly resulting in translational stalling and lower yields of recombinant protein. We have constructed the "RIG" plasmid to overcome the potential codon-bias problem seen in Plasmodium genes. RIG contains the genes that encode three tRNAs (Arg, Ile, Gly), which recognise rare codons found in parasite genes. When co-transformed into E. coli along with expression plasmids containing parasite genes, RIG can greatly increase levels of overexpressed protein. Codon frequency analysis suggests that RIG may be applied to a variety of protozoan and helminth genes. (C) 2000 Australian Society for Parasitology Inc. Published by Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:113 / 118
页数:6
相关论文
共 19 条
[1]
HIGH-LEVEL EXPRESSION OF RECOMBINANT GENES IN ESCHERICHIA-COLI IS DEPENDENT ON THE AVAILABILITY OF THE DNAY GENE-PRODUCT [J].
BRINKMANN, U ;
MATTES, RE ;
BUCKEL, P .
GENE, 1989, 85 (01) :109-114
[2]
EFFECTS OF A MINOR ISOLEUCYL TRANSFER-RNA ON HETEROLOGOUS PROTEIN TRANSLATION IN ESCHERICHIA-COLI [J].
DELTITO, BJD ;
WARD, JM ;
HODGSON, J ;
GERSHATER, CJL ;
EDWARDS, H ;
WYSOCKI, LA ;
WATSON, FA ;
SATHE, G ;
KANE, JF .
JOURNAL OF BACTERIOLOGY, 1995, 177 (24) :7086-7091
[3]
EXPRESSION, PURIFICATION, BIOCHEMICAL-CHARACTERIZATION AND INHIBITION OF RECOMBINANT PLASMODIUM-FALCIPARUM ALDOLASE [J].
DOBELI, H ;
TRZECIAK, A ;
GILLESSEN, D ;
MATILE, H ;
SRIVASTAVA, IK ;
PERRIN, LH ;
JAKOB, PE ;
CERTA, U .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 1990, 41 (02) :259-268
[4]
EFFECTS OF RARE CODON CLUSTERS ON HIGH-LEVEL EXPRESSION OF HETEROLOGOUS PROTEINS IN ESCHERICHIA-COLI [J].
KANE, JF .
CURRENT OPINION IN BIOTECHNOLOGY, 1995, 6 (05) :494-500
[5]
Codon usages in different gene classes of the Escherichia coli genome [J].
Karlin, S ;
Mrázek, J ;
Campbell, AM .
MOLECULAR MICROBIOLOGY, 1998, 29 (06) :1341-1355
[6]
Errors of heterologous protein expression [J].
Kurland, C ;
Gallant, J .
CURRENT OPINION IN BIOTECHNOLOGY, 1996, 7 (05) :489-493
[7]
EVIDENCE FOR HORIZONTAL GENE-TRANSFER IN ESCHERICHIA-COLI SPECIATION [J].
MEDIGUE, C ;
ROUXEL, T ;
VIGIER, P ;
HENAUT, A ;
DANCHIN, A .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 222 (04) :851-856
[8]
STAGE-SPECIFIC EXPRESSION OF ALDOLASE ISOENZYMES IN THE RODENT MALARIA PARASITE PLASMODIUM-BERGHEI [J].
MEIER, B ;
DOBELI, H ;
CERTA, U .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 1992, 52 (01) :15-28
[9]
Codon usage tabulated from the international DNA sequence databases [J].
Nakamura, Y ;
Gojobori, T ;
Ikemura, T .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :334-334
[10]
Vaccine candidate MSP-1 from Plasmodium falciparum:: a redesigned 4917 bp polynucleotide enables synthesis and isolation of full-length protein from Escherichia coli and mammalian cells [J].
Pan, WQ ;
Ravot, E ;
Tolle, R ;
Frank, R ;
Mosbach, R ;
Türbachova, I ;
Bujard, H .
NUCLEIC ACIDS RESEARCH, 1999, 27 (04) :1094-1103