Prokka: rapid prokaryotic genome annotation

被引：11367

作者：

Seemann, Torsten ^{[1
,2
]}

机构：

[1] Monash Univ, Victorian Bioinformat Consortium, Clayton, Vic 3800, Australia

[2] Victorian Life Sci Computat Initiat, Life Sci Computat Ctr, Carlton, Vic 3053, Australia

来源：

BIOINFORMATICS | 2014年 / 30卷 / 14期

关键词：

D O I：

10.1093/bioinformatics/btu153

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

.Summary: The multiplex capability and high yield of current day DNA-sequencing instruments has made bacterial whole genome sequencing a routine affair. The subsequent de novo assembly of reads into contigs has been well addressed. The final step of annotating all relevant genomic features on those contigs can be achieved slowly using existing web- and email-based systems, but these are not applicable for sensitive data or integrating into computational pipelines. Here we introduce Prokka, a command line software tool to fully annotate a draft bacterial genome in about 10 min on a typical desktop computer. It produces standards-compliant output files for further analysis or viewing in genome browsers.

引用

页码：2068 / 2069

页数：2

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