Exome Sequencing: New Insights into Lipoprotein Disorders

被引:15
作者
Farhan, Sali M. K. [1 ,2 ]
Hegele, Robert A. [1 ,2 ,3 ]
机构
[1] Univ Western Ontario, Schulich Sch Med & Dent, Robarts Res Inst, Dept Biochem, London, ON N6A 5B7, Canada
[2] Univ Western Ontario, Schulich Sch Med & Dent, Robarts Res Inst, Dept Med, London, ON N6A 5B7, Canada
[3] Univ Western Ontario, Robarts Res Inst, Blackburn Cardiovasc Genet Lab, London, ON N6A 5B7, Canada
关键词
Next-generation DNA sequencing; Diagnosis Mutation; Inherited disorders; Dyslipidemia; Hypercholesterolemia; Hypertriglyceridemia; Exome sequencing; Lipoprotein disorders; DIETARY-CHOLESTEROL; GENETIC-VARIANTS; RARE VARIANTS; DISEASE; MUTATIONS; GENOME; IDENTIFICATION; HETEROGENEITY; DISCOVERY; CANCER;
D O I
10.1007/s11886-014-0507-2
中图分类号
R5 [内科学];
学科分类号
100201 [内科学];
摘要
Several next generation sequencing platforms allow for a DNA-to-diagnosis protocol to identify the molecular basis of monogenic dyslipidemias. However, recent reports of the application of whole genome or whole exome sequencing in families with severe dyslipidemias have largely identified genetic variants in known lipid genes. To date, high-throughput DNA sequencing in families with previously uncharacterized monogenic dyslipidemias, have failed to reveal new genes for regulation of plasma lipids. This suggests that rather than sequencing whole genomes or exomes, most patients with monogenic dyslipidemias could be diagnosed using a more dedicated approach that focuses primarily on genes already known to act within lipoprotein metabolic pathways.
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收藏
页数:10
相关论文
共 45 条
[1]
APOE p.Leu167del mutation in familial hypercholesterolemia [J].
Awan, Zuhier ;
Choi, Hong Y. ;
Stitziel, Nathan ;
Ruel, Isabelle ;
Bamimore, Mary Aderayo ;
Husa, Regina ;
Gagnon, Marie-Helene ;
Wang, Rui-Hao L. ;
Peloso, Gina M. ;
Hegele, Robert A. ;
Seidah, Nabil G. ;
Kathiresan, Sekar ;
Genest, Jacques .
ATHEROSCLEROSIS, 2013, 231 (02) :218-222
[2]
Accumulation of dietary cholesterol in sitosterolemia caused by mutations in adjacent ABC transporters [J].
Berge, KE ;
Tian, H ;
Graf, GA ;
Yu, LQ ;
Grishin, NV ;
Schultz, J ;
Kwiterovich, P ;
Shan, B ;
Barnes, R ;
Hobbs, HH .
SCIENCE, 2000, 290 (5497) :1771-1775
[3]
Rare-disease genetics in the era of next-generation sequencing: discovery to translation [J].
Boycott, Kym M. ;
Vanstone, Megan R. ;
Bulman, Dennis E. ;
MacKenzie, Alex E. .
NATURE REVIEWS GENETICS, 2013, 14 (10) :681-691
[4]
A Novel APOB Mutation Identified by Exome Sequencing Cosegregates With Steatosis, Liver Cancer, and Hypocholesterolemia [J].
Cefalu, Angelo B. ;
Pirruccello, James P. ;
Noto, Davide ;
Gabriel, Stacey ;
Valenti, Vincenza ;
Gupta, Namrata ;
Spina, Rossella ;
Tarugi, Patrizia ;
Kathiresan, Sekar ;
Averna, Maurizio R. .
ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 2013, 33 (08) :2021-2025
[5]
First FDA Authorization for Next-Generation Sequencer [J].
Collins, Francis S. ;
Hamburg, Margaret A. .
NEW ENGLAND JOURNAL OF MEDICINE, 2013, 369 (25) :2369-2371
[6]
Exome sequencing and complex disease: practical aspects of rare variant association studies [J].
Do, Ron ;
Kathiresan, Sekar ;
Abecasis, Goncalo R. .
HUMAN MOLECULAR GENETICS, 2012, 21 :R1-R9
[7]
Variable expressivity of the clinical and biochemical phenotype associated with the apolipoprotein E p. Leu149del mutation [J].
Faivre, L ;
Saugier-Veber, P ;
de Barros, JPP ;
Verges, B ;
Couret, B ;
Lorcerie, B ;
Thauvin, C ;
Charbonnier, F ;
Huet, F ;
Gambert, P ;
Frebourg, T ;
Duvillard, L .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2005, 13 (11) :1186-1191
[8]
Western Database of Lipid Variants (WDLV): A Catalogue of Genetic Variants in Monogenic Dyslipidemias [J].
Fu, Jennifer ;
Kwok, Samantha ;
Sinai, Leah ;
Abdel-Razek, Omar ;
Babula, Janet ;
Chen, Dennis ;
Farago, Emma ;
Fernandopulle, Nigel ;
Leith, Sean ;
Loyzer, Melissa ;
Lu, Catherine ;
Malkani, Niyati ;
Morris, Nicole ;
Schmidt, Mandi ;
Stringer, Randa ;
Whitehead, Heather ;
Ban, Matthew R. ;
Dube, Joseph B. ;
McIntyre, Adam ;
Johansen, Christopher T. ;
Cao, Henian ;
Wang, Jian ;
Hegele, Robert A. .
CANADIAN JOURNAL OF CARDIOLOGY, 2013, 29 (08) :934-939
[9]
Evaluation of next generation sequencing platforms for population targeted sequencing studies [J].
Harismendy, Olivier ;
Ng, Pauline C. ;
Strausberg, Robert L. ;
Wang, Xiaoyun ;
Stockwell, Timothy B. ;
Beeson, Karen Y. ;
Schork, Nicholas J. ;
Murray, Sarah S. ;
Topol, Eric J. ;
Levy, Samuel ;
Frazer, Kelly A. .
GENOME BIOLOGY, 2009, 10 (03)
[10]
Lipodystrophies: Windows on adipose biology and metabolism [J].
Hegele, Robert A. ;
Joy, Tisha R. ;
Al-Attar, Salam A. ;
Rutt, Brian K. .
JOURNAL OF LIPID RESEARCH, 2007, 48 (07) :1433-1444